Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g609 ATGAAAGATCTTTTAGAAGCGCATATTCCTCCGGGAGGACGATTGGGGCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATTAGGCCTTGCTCTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTATTCTTTACCGGCTTATACGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATCATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTAGAGATTACAATCCGGAGCAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTATTTTTGGGGTTCCATACCTTGGGACTTTATGTTCATAATGATGTCATGCTTGCGTTTGGTACTCCGGAGAAACAAATCTTGATTGAACCGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAACCGGATATGAATAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCATTTTTTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGATACACGTTACACCACGATTTTGAATCAGAACCCCAAACTGTTAAAAAACAAAATTTTTTTACTTTATCTTTCATTGAATCTTTATCAAGGGACCTTAAACAGTTAG 741 37.92 MKDLLEAHIPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYTFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPYLQNTVSIHPISSDPGCDMVPKDEPDMNSSNKISFLNKNPFFDLFHLFHDRNRGDTRYTTILNQNPKLLKNKIFLLYLSLNLYQGTLNS* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7060606 7061347 + Vvi18g609 Vvi18g609 780312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g609 246 Pfam Plant protein of unknown function (DUF825) 156 213 IPR008543 -
Vvi18g609 246 Gene3D Photosystem I PsaA/PsaB 1 196 IPR036408 -
Vvi18g609 246 SUPERFAMILY Photosystem I subunits PsaA/PsaB 1 165 IPR036408 -
Vvi18g609 246 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 1 177 - -
Vvi18g609 246 Pfam Photosystem I psaA/psaB protein 1 163 IPR001280 GO:0009579|GO:0015979|GO:0016021
Vvi18g609 246 PANTHER PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 1 177 - -
Vvi18g609 246 PRINTS Plant photosystem I psaA and psaB protein signature 30 53 IPR001280 GO:0009579|GO:0015979|GO:0016021
Vvi18g609 246 PRINTS Plant photosystem I psaA and psaB protein signature 69 95 IPR001280 GO:0009579|GO:0015979|GO:0016021
Vvi18g609 246 PRINTS Plant photosystem I psaA and psaB protein signature 117 139 IPR001280 GO:0009579|GO:0015979|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g609 K02690 psaB; photosystem I P700 chlorophyll a apoprotein A2 - vvi:4025090 320.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000488 3 0 1 2 0 4 0 9 5 0 4 4 8 3 4 3 3 0 0 4 0 0 1 3 3 5 5 4 2 3 83