Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g611 ATGGCGGAGCAGGTCAAGTTGTTCGTTGGGGGAGTTTCCGGCGCCATCACCGAAGGGCTGCTGAGGGACTACTTCAGCAAGTACGGTACTGTTGTGGAGACTTACATTAGAAGGGATTCTGGGAGAACGCCTAGAGGGGGCTTTGGATTTGTTACTTTTGCTGACGCTGCTTCCCTCAGTAGAGCTCTCCAGGATCAGCAGCAGCATTTTATACAAGGACAAAGGGTCGAAGTGAAAAGGGCGATGAACAAAGGTCAGAGAAATTTAGATGGTAGTGGCAATAATAATTTTACGTCGAAAAAGATCTTTGTGGGAGGGTTATCATCTAATCTAACAGAGGAAGAATTCAAGAATTACTTTGAGAGGTTTGGTAGAATTACAGATGTAGTTGTGATGCACGATAGCGCTACTCGCCGCCCGAGGGGATTTGGGTTCATTACTTTTGAGTCTGAGGAATCTGTTGAGCATGTTATGCAGAATAACTTCTATGAGTTAAATGGAAAGCGTGTGGAGGTGAAGAGAGCCGTGCCAAAAGAAGCAAACAACAATAATAAAAATGGTTATAATATGAGGATGGGTGGTGGAAGAGGGTCTTCCTTTCCTCTGCATGGGCAGAACTTGCCTTATGCTCCTGCTCCTGGATATGAGATTTTTCCAGGTTATTTTCCTTATTCAGGATATGGATGTATTGAAAATTATTGTTATGCTGCAACTAGCATGTATCCTGGTGGTTACTTTATGGGAGAGAATGCTGGAATTGACTATGGAAGGACACCTTTTCAGCACCCTTGGAATGGCCCTGGATCTCTTGGCAGTGCTATCATGTATCCTCCATACTCAAGTGGTAGGAACATGGTTGCTGGTTCGTCTAATGGGCTTGTAGGGCCAAGAACAAGCTCTAGATCACAAGCTGATGCGACCCCAACCCCATCTCAGAATGACTCTTCCTTGGAGGATGCTAATGGTAACTTCAATCCTCCCTCTTTGGTCCTGAACAATTCAGTTGGGGGAAAGTTGGGTATGCTAATAATTTTTAGCATTGCCCCAAATTTTATTCTGTCACTTGAAAGTAAAAAAAATTTAGCATCCCAGAAAGAGGATCTATCTGTAAGACCCTTCGCAATGCTCTCCTAG 1134 44.09 MAEQVKLFVGGVSGAITEGLLRDYFSKYGTVVETYIRRDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQRVEVKRAMNKGQRNLDGSGNNNFTSKKIFVGGLSSNLTEEEFKNYFERFGRITDVVVMHDSATRRPRGFGFITFESEESVEHVMQNNFYELNGKRVEVKRAVPKEANNNNKNGYNMRMGGGRGSSFPLHGQNLPYAPAPGYEIFPGYFPYSGYGCIENYCYAATSMYPGGYFMGENAGIDYGRTPFQHPWNGPGSLGSAIMYPPYSSGRNMVAGSSNGLVGPRTSSRSQADATPTPSQNDSSLEDANGNFNPPSLVLNNSVGGKLGMLIIFSIAPNFILSLESKKNLASQKEDLSVRPFAMLS* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7074317 7076680 - Vvi18g611 Vvi18g611 780314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g611 377 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vvi18g611 377 SMART rrm1_1 6 79 IPR000504 GO:0003723
Vvi18g611 377 SUPERFAMILY RNA-binding domain, RBD 5 92 IPR035979 GO:0003676
Vvi18g611 377 Gene3D - 97 189 IPR012677 -
Vvi18g611 377 SUPERFAMILY RNA-binding domain, RBD 96 199 IPR035979 GO:0003676
Vvi18g611 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 76 IPR000504 GO:0003723
Vvi18g611 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vvi18g611 377 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 329 - -
Vvi18g611 377 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 329 - -
Vvi18g611 377 MobiDBLite consensus disorder prediction 287 321 - -
Vvi18g611 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 83 IPR000504 GO:0003723
Vvi18g611 377 Gene3D - 2 89 IPR012677 -
Vvi18g611 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g611 K14411 MSI; RNA-binding protein Musashi - vvi:100255821 680.633
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32