Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g614 ATGGCCAATAATCCTCAATCTTCTGGGGCACAGCCACTTCGGCCTCCTGCAGTTGGATCCATGGGGCCTCAAAATTTTGGTCCACCATTATCTATGCAGTTTCGACCTGCGGTTCCGGGACAACAAGGACATCCGTTCATTCCAGCAGCTTCTCAACAATTTCGGCCAATTGGACAAAATATTTCTTCACCAAATGTGGGAGGGCCTTCTGGTCAAAATCAGCCGCCGCAGTTTTCTCAAGCTATGCAGCAGTTACCACCTAGGCCAAACCAGCCTGGTCCCATTGCACCTTCATCACAGCCAATTCCCATGCCATACATTCAGCAAAACAGACCTCTTACTTCCAGCTCGCCGCAGCCTAATCAAACTGCTCCCCCTTTAAATAGTCATATGCCTGGTCTGGCTGGCCCAGGAATGCCTTTCTCATCATCGTATACTTTTGCACCAGCTTCTTTTGGCCAGCCACAAAGTACTATTAATGCATCAGCGCAGTTTCAACCAATATCTCAAATGCATGCACCTGTTGGGGGACAGCCTTGGTTGTCATCTGGAAGTCAGAGTGGTGCCCTAGTTACACCGGTTCATCAGGCTGGCCAACAGCCTTCTGTTACTGCTGACATTCCAGCGGGAAATGTTCCTAACCCAACTCATCAATCCTCATCTGATTGGCAAGAGCACACATCAGCTGATGGAAGAAGATATTACTACAACAAGAAGACAAGACTTTCTAGTTGGGAAAAGCCTTTGGAATTAATGACTCCAATTGAGAGGGCTGATGCGTCAACTGTTTGGAAGGAATTCACAACTCCAGAAGGAAGGAAATATTATTACAACAAGGTTACAAAGCAATCTAAATGGACAATACCTGAAGAATTGAAGTTGGCTCGAGAACAGGCTGAAAAATCAGTTAGCCAGGAAACTCAATCTGAAATGGGTACAACTTCCAATGAACCTGCTGTTGTTGCTGTCTCCTTGGCCGAAACACCATCTACTGCATCAGTTTCGGTTAGCTCTACCACTTCTTCGACAATATCTGGAATGACTTCAAGCCCAGTTCCAGTTACACCTGTTGTTGCAGTTGTTAACCCTCCTCCTGTGGTGGTTTCTGGAACATCAGCCATTCCAATTGCACAATCTGCTGTAACAACAAGTGCAGTTGGAGTTCAGCCTTCTATGGGAACCCCTTTACCTGCTGCTGTTTCTGGAAGTACTGGGGTTGCTGCTGCTTTCATCAATCCTAACGCCACATCAATGACTAGCTTCGAGAATCTATCAGCTGATGCTACAAATGGAGCTTCAATGCAGGATATAGAGGAGGCAAAAAAAGGAGTGGCAGTTGCAGGAAAAATTAATGTGACTCCGCTAGAGGAGAAAACACTTGACGATGAACCTTTGGTATACTCTACTAAGCTGGAGGCAAAAAATGCATTCAAAGCGCTCTTGGAATCTGCAAATGTTGAGTCTGACTGGACTTGGGATCAGGCAATGAAAGCGATAATTAATGACAAGAGATATGGTGCCCTGAAAACACTTGGTGAGCGGAAGCAAGCATTTAATGAATACTTGGGTCAAAGGAAAAAAATTGAGGCTGAGGAGAGGCGCATGAGGCAGAAAAAAGCCCGGGAAGAGTTTACAACAATGCTGGAAGAGTGCAAGGAACTCACATCATCCATAAAATGGAGCAAAGCTGTAGATATGTTTCAAGATGATGAACGGTTCAAGGCTGTTGAACGGTCTAGGGACCGTGAGGATCTTTTTGAAAACTTCATAATGGAACTTCAGAAAAAGGAAAGGACAAAGGCGCTTGAGGAGCAGAAGCGGAATAGGATGGAGTACAGGCAATTTCTTGAATCTTGTGACTTTATTAAGGTGAACAGCCAGTGGCGGAAAGTTCAAGATCGCCTGGAGGATGATGAAAGATGCTCCCGACTTGAAAAAATTGATCGCTTGGAGATTTTCCAGGAATATATTCGTGACCTAGAGAGAGAAGAAGAGGAACAGAGGAAGATACAGAAGGAACAATTGAGGCGTGCTGAGAGAAAGAACCGAGATGAATTTCGGAAGCTGATGGAAGAGCATGTTGCTGCTGGCACTCTGACAGCCAAAACTCACTGGCGGGATTATTGCATGAAGGTTAAAGATTCGTCACCATATCTGGCTGTTGCATCCAACACCTCTGGTTCAACCCCAAAAGATCTGTTTGAGGATGTTGCTGAAGAATTAGAGAAACAGTATCATGAAGACAAAGCTCGTATAAAGGATGCAATGAAGTTAAGCAAAGTTACGATTGCATCAACATGGACATTTGGAGACTTCAAGGCTGCTATTTTGGATGATGTTGGGTCCCCAAACATTTCAGATGTGAACTTAAAGCTTGTATTTGAGGAGCTACTTGATAGAATAAAGGAGAAGGAAGAGAAAGAAGCTAAAAAACGTCAACGTCTTGCTGATGATTTCAATGATCTGTTGCGCTCCAAAAAGGAGATAACTGCGTCTTCTAATTGGGAAGATTGCAAACCACTTTTTGAAGAAAGCCAAGAATACAGATCAATTGGGGAAGAAAGCTTTGGGAGGGAAATCTTTGAGGAATACATTGCACACTTACAGGAGAAAGCCAAAGAAAAGGAACGCAAGCGAGAGGAGGAAAAGGCCAAAAAAGAGAAAGAGAGAGAGGAGAAAGAGAAAAGGAAGGAGAAAGAAAGGAAAGAGAAAGACAGAGATCGTGAAAGGGAAAAGGGAAAGGAACGATCTAGGAAGGATGAAACAGAGAGTGAAAATGTAGATGTAACTGGCAGTTACGGCTATAAAGAAGATAAAAAAAGGGAAAAGGACAAAGATAGAAAACATCGAAAGCGTCACCAAAGTGCTGTTGATGATGCAAGCTCTGATAAGGAAGAGAAAGAGGAGTCTAAGAAATCTAGAAGACATGGAAGTGATCGAAAAAAATCAAGAAAGCATGCATACACTCCTGAATCAGACACTGAAAGCAGGCATAAAAGACACAAGAGAGAGCACTGGGATGGTTCCCGAAGAAATGGAGGTTATGAAGAACTTGAAGATGGGGAGCTTGGTGAGGATGGGGAAATTCGGTAG 3093 43.94 MANNPQSSGAQPLRPPAVGSMGPQNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQNISSPNVGGPSGQNQPPQFSQAMQQLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSSPQPNQTAPPLNSHMPGLAGPGMPFSSSYTFAPASFGQPQSTINASAQFQPISQMHAPVGGQPWLSSGSQSGALVTPVHQAGQQPSVTADIPAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAVVNPPPVVVSGTSAIPIAQSAVTTSAVGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTSFENLSADATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKALLESANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKAREEFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTKALEEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEREEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLAVASNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDVGSPNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKPLFEESQEYRSIGEESFGREIFEEYIAHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDRDREREKGKERSRKDETESENVDVTGSYGYKEDKKREKDKDRKHRKRHQSAVDDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSRRNGGYEELEDGELGEDGEIR* 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7107576 7146936 + Vvi18g614 Vvi18g614 780317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g614 1030 Gene3D FF domain 806 880 IPR036517 -
Vvi18g614 1030 Gene3D FF domain 470 525 IPR036517 -
Vvi18g614 1030 ProSiteProfiles FF domain profile. 470 524 IPR002713 -
Vvi18g614 1030 Coils Coil 950 970 - -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 195 227 - -
Vvi18g614 1030 Pfam WW domain 264 289 IPR001202 GO:0005515
Vvi18g614 1030 Pfam WW domain 221 248 IPR001202 GO:0005515
Vvi18g614 1030 Coils Coil 731 758 - -
Vvi18g614 1030 ProSiteProfiles FF domain profile. 812 867 IPR002713 -
Vvi18g614 1030 Coils Coil 593 613 - -
Vvi18g614 1030 Coils Coil 794 818 - -
Vvi18g614 1030 SUPERFAMILY WW domain 222 256 IPR036020 GO:0005515
Vvi18g614 1030 SUPERFAMILY FF domain 672 747 IPR036517 -
Vvi18g614 1030 CDD WW 221 250 IPR001202 GO:0005515
Vvi18g614 1030 ProSiteProfiles WW/rsp5/WWP domain profile. 217 250 IPR001202 GO:0005515
Vvi18g614 1030 ProSiteProfiles FF domain profile. 677 740 IPR002713 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 102 128 - -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 87 101 - -
Vvi18g614 1030 Pfam FF domain 608 656 IPR002713 -
Vvi18g614 1030 Pfam FF domain 817 864 IPR002713 -
Vvi18g614 1030 Pfam FF domain 472 521 IPR002713 -
Vvi18g614 1030 Pfam FF domain 539 589 IPR002713 -
Vvi18g614 1030 Pfam FF domain 681 736 IPR002713 -
Vvi18g614 1030 SMART ww_5 259 291 IPR001202 GO:0005515
Vvi18g614 1030 SMART ww_5 218 250 IPR001202 GO:0005515
Vvi18g614 1030 SUPERFAMILY FF domain 805 874 IPR036517 -
Vvi18g614 1030 ProSiteProfiles FF domain profile. 537 592 IPR002713 -
Vvi18g614 1030 SUPERFAMILY WW domain 251 292 IPR036020 GO:0005515
Vvi18g614 1030 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 2 1024 IPR039726 GO:0045292
Vvi18g614 1030 SUPERFAMILY FF domain 462 524 IPR036517 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 53 86 - -
Vvi18g614 1030 Coils Coil 653 692 - -
Vvi18g614 1030 ProSiteProfiles WW/rsp5/WWP domain profile. 258 291 IPR001202 GO:0005515
Vvi18g614 1030 SUPERFAMILY FF domain 531 598 IPR036517 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 951 975 - -
Vvi18g614 1030 Gene3D - 216 258 - -
Vvi18g614 1030 Gene3D - 259 304 - -
Vvi18g614 1030 Coils Coil 858 912 - -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 871 1030 - -
Vvi18g614 1030 SMART FF_2 812 867 IPR002713 -
Vvi18g614 1030 SMART FF_2 679 740 IPR002713 -
Vvi18g614 1030 SMART FF_2 537 592 IPR002713 -
Vvi18g614 1030 SMART FF_2 470 524 IPR002713 -
Vvi18g614 1030 SMART FF_2 605 659 IPR002713 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 871 944 - -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 984 1018 - -
Vvi18g614 1030 ProSiteProfiles FF domain profile. 605 659 IPR002713 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 1 137 - -
Vvi18g614 1030 SUPERFAMILY FF domain 603 666 IPR036517 -
Vvi18g614 1030 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 2 1024 - -
Vvi18g614 1030 ProSitePatterns WW/rsp5/WWP domain signature. 223 248 IPR001202 GO:0005515
Vvi18g614 1030 Gene3D FF domain 600 668 IPR036517 -
Vvi18g614 1030 Gene3D FF domain 526 599 IPR036517 -
Vvi18g614 1030 Gene3D FF domain 669 751 IPR036517 -
Vvi18g614 1030 MobiDBLite consensus disorder prediction 195 225 - -
Vvi18g614 1030 CDD WW 264 291 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g614 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - vvi:100243779 1806.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37