Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g622 ATGCCGATGTACCAGCCATCTGGCCGGAGAAGAGATGGGGGTGTCATGTATGATGTGGGCGGCGACGGTGGGCATGTCTTAGATCTCGAAACCGCCGTGAAAGATGGGATTTTGGGGGGCGGAGGTGGGGTTGTTTGCGGCAGCGGAGTCACTGAGAAATTGGATCTGAAAAAGATGATTGAAGACCTGGACTCCATTGATGTTCCGTCTGTGTTCATATGCCCAATTTCGTTAGAGCCAATGCAGGATCCTGTGACCATTTGCACTGGCCAGACCTACGAGAGATCCAACATCGTGAAATGGTTCTCTATGGGGCACTTCACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCATCACGCCAAACAAGACTCTTTACCAACTAATTTATAGTTGGTTTTCGCAGAAGTACTTGGTCATGAAGAAGAGATCAGAAGATAGCATCATAACCATACTACTGGGGTGGAGTTTGGATGGGGTTTGGGATGTAAGAATACATGAAGAGGGAAGGGGGAGGAAGGGAATTCTAGTAGGCTTGTTTCTTCAATTGTAA 558 48.03 MPMYQPSGRRRDGGVMYDVGGDGGHVLDLETAVKDGILGGGGGVVCGSGVTEKLDLKKMIEDLDSIDVPSVFICPISLEPMQDPVTICTGQTYERSNIVKWFSMGHFTCPTTMQELWDDSITPNKTLYQLIYSWFSQKYLVMKKRSEDSIITILLGWSLDGVWDVRIHEEGRGRKGILVGLFLQL* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7290695 7292423 - Vvi18g622 Vvi18g622 780325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g622 185 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Vvi18g622 185 SUPERFAMILY RING/U-box 62 138 - -
Vvi18g622 185 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Vvi18g622 185 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Vvi18g622 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 149 IPR013083 -
Vvi18g622 185 PANTHER WDSAM1 PROTEIN 40 149 IPR045185 GO:0061630
Vvi18g622 185 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 40 149 - -
Vvi18g622 185 CDD RING-Ubox_PUB 72 114 IPR045210 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g622 - - vvi:100255725 272.707