Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g626 ATGGTGGTGGTGGACGGAGCAAGCAACGTGTCGCAGCTTGGGGAAGTGGACGACCTGGATGAAGAGCCCGGCGAGGTGATCGAGTCGGCGCCTCCACTCTGCGTTGGCCAGGAGAGGGAGCTCAACAACTCAGGCCTCAAGAAGAGGCTTCTCCACAAAGGAATTGGCTGGGAGACCCCTGACTTTGGCGACGAAGTCACTGTTCACTACGTGGGTACTTTGCTTGATGGGGGCACTTTCGATTCCACCAGAGATAGAAATGAGCCCTCGACCTTCACGCTTGGTCGTGGTGAAGTTGTTGATGGATTGGATCAAGGGATTGTTACCATGACACAGGAGGAAATTGCATTGTTCACGGTGCCTCCTCATTTGGGGTATGGAGAAGCGGGCCGCCAGGGTGTTCCTCCCAATTCGGTAGTTCAATTTCAAGTGCAGCTCATTTCGTGGATCACAGTGGTGGATGTGTGTAGGGATGGTGGAATCATCAAGAAAATTTTGGAGAAGGGAAATAGGAATGTGCAACCCGGAGATTTAGACGAACTTCTTGTGAAGTATAAAGTGAAACTGGTTGATGATACTATTGTTGCACAAACCCCCGAGGAAGGAATCGAGTTTTACATGAAAGATGGTCAGTTTTGTTCAGCAATGCCAAAGGCAATCAAGACCATGAAAAGTGGAGAGAAGGTTAAATTAATTGTTCAACCCCAATATGCCTTTGGAGATGTGGGCAGAGATGCAGAGAATGAGTTTCCATTGATTCCACCAAGTTCTGTGCTGATCATTGATCTGGAATTGGTATCCTTCAAGCCAGTTATTGATGTTACTGGTGATTCCAAGGTATTCAAGAAGATTTTGGTAGAGGGGGCAAACACTATTGCTGCAAATGAAGGTGCAACTGTTACTGTTAGGTATACAGCTAAGCTGGAAGATGGCACTATATTTGAGAAAAAAGGTTTTGATGGAGAAAATCCATTGCAATTTATCACAGATGAAGAACAAGTTATTTCTGGGTTAGACCAAGCAGTGGCAACGATGACGAAGGGGGAGCGGTCAATTGTGACAATACATCCTGAATATGGATATGGAAGCATTGAAGTTATGCAGGACATTTCTATTGTTCCGCCAAGTTCAATTATAATCTATGAAGTTGAAATGTTAGATTTTGTCAAGGAGAAAGCACCATGGGAGATGAGTGATCAAGAGAAAATTGAGACAGCTGGAAGAAAGAAAGAAGAAGGTAATCTACTATTTAAGAGTGGGAAGTATCAACGAGCACGAAAAAAGTATGACAAGGCTGCTGATTATGTTAGTGAATGTGGAATCTTTGGCGATGGTGACCACAAGGTAGTCGAAACATTGCAAGTGTCTTGCTGGTTGAATGGTGCAGCATGTTGTCTCAAACTAAATAACTTCCCGGGAGCAATCAAGCTATGTTCGAAGGTTCTAGATATTGAGTTCCACAATGTGAAAGCTTTGTACAGGCGAGCACAAGCTTATATGAAAACTGCTGATTTGGACTTGGCTCAATTGGATATCAAGAAAGCCCTTGAGGCAGATCCTCAGAACAGGGAGGTGAAATTAATGCAAAAGAATTTGAAACAACTTCAAGGTGAGAGCAACAAGAGAGATGCAAAACTCTATTCCAACATGTTTGCACCTATGAGAAATGACACTGCTGTAGCAACAAAGAAATTGAAGGTTGAGAAAGCTGAGGATAAGAAAGGAGATGCAGAGGTGGTCGCAACAGAAATGGAAAAAGTTGCTGTTAGTTCTGACAGTGGAATGGCTGTTGATTCTTGTTGA 1803 43.87 MVVVDGASNVSQLGEVDDLDEEPGEVIESAPPLCVGQERELNNSGLKKRLLHKGIGWETPDFGDEVTVHYVGTLLDGGTFDSTRDRNEPSTFTLGRGEVVDGLDQGIVTMTQEEIALFTVPPHLGYGEAGRQGVPPNSVVQFQVQLISWITVVDVCRDGGIIKKILEKGNRNVQPGDLDELLVKYKVKLVDDTIVAQTPEEGIEFYMKDGQFCSAMPKAIKTMKSGEKVKLIVQPQYAFGDVGRDAENEFPLIPPSSVLIIDLELVSFKPVIDVTGDSKVFKKILVEGANTIAANEGATVTVRYTAKLEDGTIFEKKGFDGENPLQFITDEEQVISGLDQAVATMTKGERSIVTIHPEYGYGSIEVMQDISIVPPSSIIIYEVEMLDFVKEKAPWEMSDQEKIETAGRKKEEGNLLFKSGKYQRARKKYDKAADYVSECGIFGDGDHKVVETLQVSCWLNGAACCLKLNNFPGAIKLCSKVLDIEFHNVKALYRRAQAYMKTADLDLAQLDIKKALEADPQNREVKLMQKNLKQLQGESNKRDAKLYSNMFAPMRNDTAVATKKLKVEKAEDKKGDAEVVATEMEKVAVSSDSGMAVDSC* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7324242 7332148 + Vvi18g626 Vvi18g626 780329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g626 600 Gene3D - 153 269 IPR046357 GO:0003755
Vvi18g626 600 SUPERFAMILY FKBP-like 157 270 - -
Vvi18g626 600 ProSiteProfiles TPR repeat profile. 489 522 IPR019734 GO:0005515
Vvi18g626 600 SMART tpr_5 455 488 IPR019734 GO:0005515
Vvi18g626 600 SMART tpr_5 406 439 IPR019734 GO:0005515
Vvi18g626 600 SMART tpr_5 489 522 IPR019734 GO:0005515
Vvi18g626 600 Gene3D Tetratricopeptide repeat domain 395 549 IPR011990 GO:0005515
Vvi18g626 600 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 269 IPR001179 GO:0003755
Vvi18g626 600 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 58 147 IPR001179 GO:0003755
Vvi18g626 600 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 386 IPR001179 GO:0003755
Vvi18g626 600 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 177 266 IPR001179 GO:0003755
Vvi18g626 600 Gene3D - 37 152 IPR046357 GO:0003755
Vvi18g626 600 SUPERFAMILY TPR-like 396 554 IPR011990 GO:0005515
Vvi18g626 600 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 63 150 IPR001179 GO:0003755
Vvi18g626 600 Gene3D - 270 394 IPR046357 GO:0003755
Vvi18g626 600 PANTHER PEPTIDYLPROLYL ISOMERASE 9 273 - -
Vvi18g626 600 PANTHER PEPTIDYLPROLYL ISOMERASE 271 388 - -
Vvi18g626 600 PANTHER PEPTIDYLPROLYL ISOMERASE 387 573 - -
Vvi18g626 600 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 297 389 IPR001179 GO:0003755
Vvi18g626 600 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 273 - -
Vvi18g626 600 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 387 573 - -
Vvi18g626 600 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 271 388 - -
Vvi18g626 600 SUPERFAMILY FKBP-like 41 151 - -
Vvi18g626 600 SUPERFAMILY FKBP-like 274 406 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g626 K09571 - vvi:100250536 1181.78