Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g627 ATGAGAAGGCCGGCACAAGCCCAGTACTTTCAAGCAGTTCAAAAACTTAGAACATTTTATTTCTTCAGTACTTGCAAGCGAAAGGCATTACCGGCGAGACCCATGGCCATGCTTTGTTCCATATTCCGTCAGTTTCTTTTTATTAATCTTGTTTTGCAGGTTAGTTCAGTGGTTGCAGCATCTCATTCGCCCGTGAAGTTTCTTCCAGGTTTTGAGGGGCCTCTCCCTTTTGAGCTGGAAACTGGGTATGTGGGAGTGGGTGAATCAGAGGAAGTGCAGTTATTCTACTACTTTGTAAAGTCGGAGAATAACCCGACGGAGGATCCTCTCCTGCTCTGGCTAACGGGAGGCCCCGGTTGCTCTGCCTTCTCTGCTCTATTCTATGAAATAGGTCCACTGTACTTCGAGTCAGTACCGTACCATGGGAGCTTGCCCACGTTGGAACTGAACCCACACTCGTGGACACAGGTATCCAACATAATATTTTTGGATGCGCCTGTCGGCACTGGATTCTCCTATGCAACAACTTCTCGTGCTTCTCATTCAGGCGACTTTCAAGCAACTCATCAGGCACATGAGTTTCTTAGGAAGTGGCTGATTGATCATCCAGAATTCCTCTCAAATCCGGTCTATGTGGGGGGAGACTCCTACTCTGGGATTACCGTCCCTGTCGTGGTTCAACACATCTCGAATGGAAATGAAGATGATACTGAACCCTTCATCAATCTCAAGGGGTACTTGCTTGGAAACCCCGTAACAGAGCAAGGTACTGAAACAACCGCACAATTCCGATTTGCTCATGGAATGGCACTCATTTCTGATGAACTCTATGAGTCACTGAAGACAAGTTGTGGAGATGAATATCCGTTCAAGTATCCCATCAATATACAGTGTATAAAGGATGTTCAGGCTTTTTATAAGTGCATTTCAGGAATTCAATTTGGACAGATTTTAGAACCCGTGTGTGGTTTCGGTTCCCTAAAGCCGGAAGATATTTTCTTAAGTGGAAGAAGATATCTGATTGGGAAACTCAGAGAGCGCCGCCCAGAGCCATCACTTTCTGCATTTGAATGCCGTACTGATGGATACATCCTTGCTCCTTACTGGGCAAATAACGCCACTGTCCAAGAAGCGCTTCATATTAGAAAGAATACAATAAGAGAGTGGCAGAGATGCGCGATGGGATTATCTTATACGCCTGAAATTGAGAGCAGTTTTGAATATCATGTAACTCTAAGTAAAAAGGGTTACCGATCTCTAATATACAGTGGTGACCATGACATGATTGTGCCCTTCTTTTCAACTCAAGCATGGATAAGATCTCTGAACTACTCCATTGTTGATGACTGGAGATCATGGATGGTGGAAGGCCAAGTTGGAGGATATACGAGGACTTATTCCAACCAGATGACATTTGCGACTGTTAAGGGAGGAGGGCACACAGCACCAGAATACAGGCCTAAAGAGTGTTTTGGTATGTATAAAAGATGGGTATCTGGACAGCCTCTGTAA 1512 44.91 MRRPAQAQYFQAVQKLRTFYFFSTCKRKALPARPMAMLCSIFRQFLFINLVLQVSSVVAASHSPVKFLPGFEGPLPFELETGYVGVGESEEVQLFYYFVKSENNPTEDPLLLWLTGGPGCSAFSALFYEIGPLYFESVPYHGSLPTLELNPHSWTQVSNIIFLDAPVGTGFSYATTSRASHSGDFQATHQAHEFLRKWLIDHPEFLSNPVYVGGDSYSGITVPVVVQHISNGNEDDTEPFINLKGYLLGNPVTEQGTETTAQFRFAHGMALISDELYESLKTSCGDEYPFKYPINIQCIKDVQAFYKCISGIQFGQILEPVCGFGSLKPEDIFLSGRRYLIGKLRERRPEPSLSAFECRTDGYILAPYWANNATVQEALHIRKNTIREWQRCAMGLSYTPEIESSFEYHVTLSKKGYRSLIYSGDHDMIVPFFSTQAWIRSLNYSIVDDWRSWMVEGQVGGYTRTYSNQMTFATVKGGGHTAPEYRPKECFGMYKRWVSGQPL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7332605 7337314 + Vvi18g627 Vvi18g627 780330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g627 503 Pfam Serine carboxypeptidase 69 500 IPR001563 GO:0004185|GO:0006508
Vvi18g627 503 Gene3D alpha/beta hydrolase 71 502 IPR029058 -
Vvi18g627 503 PANTHER CARBOXYPEPTIDASE, PUTATIVE-RELATED 44 500 - -
Vvi18g627 503 SUPERFAMILY alpha/beta-Hydrolases 65 502 IPR029058 -
Vvi18g627 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 500 IPR001563 GO:0004185|GO:0006508
Vvi18g627 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 162 IPR001563 GO:0004185|GO:0006508
Vvi18g627 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 173 IPR001563 GO:0004185|GO:0006508
Vvi18g627 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 198 223 IPR001563 GO:0004185|GO:0006508
Vvi18g627 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 470 483 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g736 Vvi18g627 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g627 K16296 - vvi:100255717 967.992