Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g628 ATGGAGGACGCCTATGCTAGATCCGTCGCAGAGGTCTTGGAGTTCTTCGAGGTGGACCCAACAAAAGGTCTTACAGATTCCCAGATCTCAAAGTATGCTAGAATTTATGGTAGAAACGTGCTGCCTGAAGAGAGAAGTACCCCTTTTTGGAAATTAGTTTTGAAGCAATTCGATGATTTGCTTGTTAAGATATTAATTGCAGCAGCACTTGTTTCGTTTGTGTTGGCCTTAATTAATGGAGAGACAGGCTTAATTGCATTTCTGGAGCCTTCGGTTATCTTGATGATATTAGCTGCAAATGCAGCAGTGGGAGTAATTACAGAAACAAATGCTGAGAAAGCTCTTGAGGAGTTACGGGCCTACCAAGCTGATATTGCAACTGTGCTGCGAAATGGTTGCTTCTCCATACTACCTGCGACAGATCTTGTTCCAGGGGATATTGTAGAAGTTAGTGTGGGATGCAAAATTCCAGCTGATATGAGGATGATTGAGATGCTAAGCAATCAATTACGTGTTGATCAAGCAATTCTTACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTTGATTCCACTGTTGCTACAAACGCTGTGTACCAAGACAAGACAAATATTCTCTTCTCGGGCACAGTAGTGGTTGCTGGTAGAGCAAAAGCTGTTGTAGTTGGAGTTGGTGCCAACACTGCCATGGGCAACATACGTGATTCGATGTTACGAACAGAGGATGAAGTGACACCATTGAAAAAGAAGCTTGATGAGTTTGGAACTTTTTTGGCCAAGGTTATTGCAGGGATTTGCATGCTGGTATGGATTGTAAACATTGGTCATTTTCGTGACCCTTCTCATGGTGGGTTATTGAGAGGTGCAATTCATTACTTTAAGATTGCAGTTGCTCTTGCAGTTGCAGCAATTCCAGAAGGTCTTCCTGCAGTCGTCACAACGTGTTTGGCTCTCGGAACAAAACGGATGGCTCGGTTGAATGCTATTGTTAGGTCCTTGCCATCTGTTGAAACCCTGGGCTGCACCACAGTGATCTGCAGTGACAAGACTGGTACTCTGACTACCAATATGATGTCTGTCTCAAAGATATGTGTGTTTCATTCTGTGCACCATGGTCCTGTCACTGCAGAATATAGCATCAGTGGAACAACATATTCACCAGAGGGAGTTGTATTGGACAGTGCTGGGATTCAGCTTGATTTTCCAGCTCAGTTGCCTTGTCTTCTTCACATAGCCATGTGTTCAGCCCTTTGCAATGAGTCTATTTTACAGTACAATCCTGACAAGGGAGATTATGAAAAGATTGGTGAGGCAACAGAAGTAGCCCTCCGCGTATTGGCAGAGAAGGTTGGCCTTCCTGGTTTCAATTCCATGCCTTCTGCTCTTAATATGCTAAGCAAGCATGAGCGTGCATCTTACTGTAATCGCTACTGGGAGAACCAATTCAAAAAGGTTGCTCTTTTGGACTTTTCTCGTGATCGCAAAATGATGAGCGTCCTTTGCAGCAGAAAGCAATTGGAGATTATGTTTTCAAAAGGTGCTCCAGAGAGTATAATTTCTAGATGCACAAACATTCTGTGCAATGATGATGGTTCCACTGTTCCACTTACTGCAAATCTTCGAACTGAGCTGGAGGCAAGGTTCCGCAGTTTTGCGGAAACAGAAACTTTGAGATGCCTGGCTCTGGCCCTGAAACGGATGCCCATGGGTCAACAGACTCTCTCCTTCAATGATGAGCAGGACCTTACATTTATTGGGTTGGTGGGAATGCTTGATCCACCAAGAGAGGAAGTGAGAAATGCTATGATTTCATGCATGACTGCTGGCATCCGCGTTATAGTTGTCACAGGGGATAACAAGTCCACTGCAGAATCTGTATGTCGTAAGATAGGCGCTTTTGATCACTTAGTGGACTTTTCTGGGCACTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCATTACAACAAGCACTGGCATTGCAACGCATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAAAGAATGCTGGTTGAAGCATTGCAGCACCAGAATGAAGTGGTTGCAATGACTGGTGATGGCGTCAATGATGCGCCTGCACTTAAGAAAGCAGACATAGGAATTGCCATGGGATCAGGGACAGCAGTTGCTAAGAGTGCTTCAGATATGGTTTTGGCTGATGACAATTTTGCTTCAATTGTTGCGGCTATTGCAGAGGGAAGGGCCATATACAATAACACCAAACAATTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTTGTTTGTATTTTTGTGGCAGCTATGCTTGGAATACCCGATACCCTTGCCCCTGTCCAGCTGCTTTGGGTTAATTTGGTTACTGATGGCTTGCCTGCGACAGCTATTGGTTTTAATAAGCAAGATTCTGATGTGATGAAGGTCAAACCTCGTAAGGTGAATGAAGCAGTTGTTACTGGTTGGTTATTCTTCCGTTATCTGGTAATTGGGGCTTATGTTGGCCTTGCAACTGTTGCGGGTTTCATTTGGTGGTTTGTTTATTCTGATAATGGACCCAAACTACCATATGGTGAACTGATGAACTTTGACACTTGTTCATCAAGGGAGACAACATATCCATGCAGTATCTTTGATGATCGACACCCATCAACTGTGTCAATGACAGTTCTTGTTGTTGTTGAGATGTTCAATGCACTGAATAACCTCAGTGAAAATCAATCTCTGCTCGTTATCCCTCCTTGGAGCAACTTATGGCTTGTTGCTTCAATTGTCCTGACTATGGTCCTTCACCTGCTTATTTTGTATGTGCAACCGCTATCCATTCTTTTCTCTGTGACACCGTTATCTTGGGCTGAATGGACTGTTGTCCTATATCTTTCATTTCCTGTGATAATAATTGATGAGGTGCTGAAGTTCTTCTCAAGAAATTCCTGTGGCACAAGGTTCAATTTCAGATTCAGAAGGCCTGATGTACTACCGAAGGAGTTGCGTGACAAGTAA 3003 43.62 MEDAYARSVAEVLEFFEVDPTKGLTDSQISKYARIYGRNVLPEERSTPFWKLVLKQFDDLLVKILIAAALVSFVLALINGETGLIAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPATDLVPGDIVEVSVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSTVATNAVYQDKTNILFSGTVVVAGRAKAVVVGVGANTAMGNIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICMLVWIVNIGHFRDPSHGGLLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVFHSVHHGPVTAEYSISGTTYSPEGVVLDSAGIQLDFPAQLPCLLHIAMCSALCNESILQYNPDKGDYEKIGEATEVALRVLAEKVGLPGFNSMPSALNMLSKHERASYCNRYWENQFKKVALLDFSRDRKMMSVLCSRKQLEIMFSKGAPESIISRCTNILCNDDGSTVPLTANLRTELEARFRSFAETETLRCLALALKRMPMGQQTLSFNDEQDLTFIGLVGMLDPPREEVRNAMISCMTAGIRVIVVTGDNKSTAESVCRKIGAFDHLVDFSGHSYTASEFEELPALQQALALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAIAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAMLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDNGPKLPYGELMNFDTCSSRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMVLHLLILYVQPLSILFSVTPLSWAEWTVVLYLSFPVIIIDEVLKFFSRNSCGTRFNFRFRRPDVLPKELRDK* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7338028 7417123 - Vvi18g628 Vvi18g628 780331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g628 1000 Pfam Cation transport ATPase (P-type) 415 524 - -
Vvi18g628 1000 Gene3D - 355 592 IPR023299 GO:0000166
Vvi18g628 1000 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi18g628 1000 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi18g628 1000 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi18g628 1000 Gene3D - 55 976 - -
Vvi18g628 1000 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Vvi18g628 1000 SFLD C1.7: P-type atpase like 326 743 - -
Vvi18g628 1000 Coils Coil 111 131 - -
Vvi18g628 1000 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Vvi18g628 1000 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 370 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi18g628 1000 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 776 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi18g628 1000 Gene3D - 22 237 - -
Vvi18g628 1000 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Vvi18g628 1000 Gene3D - 342 735 IPR023214 -
Vvi18g628 1000 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Vvi18g628 1000 CDD P-type_ATPase_SERCA 5 976 - -
Vvi18g628 1000 Pfam E1-E2 ATPase 122 324 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Vvi18g628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Vvi18g628 1000 Pfam Cation transporter/ATPase, N-terminus 6 72 IPR004014 -
Vvi18g628 1000 SUPERFAMILY HAD-like 578 739 IPR036412 -
Vvi18g628 1000 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Vvi18g628 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 977 IPR023298 -
Vvi18g628 1000 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 846 IPR005782 GO:0005388|GO:0006816|GO:0016021
Vvi18g628 1000 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 2 981 - -
Vvi18g628 1000 PANTHER CALCIUM-TRANSPORTING ATPASE 2 981 - -
Vvi18g628 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Vvi18g628 1000 SFLD p-type atpase 326 743 IPR044492 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g901 Vvi18g628 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g628 K05853 - vvi:100266003 1914.81