Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g636 ATGGGCTTCTTGGCCGCCAGTCTCAGAAAGTCTTCTCGACTCTGCCGTCCTCCTTTTTCAATACCTCTCTGTTTTTCTTTATCAAACCAGCTTTTCTTACTACCCTACTCATCCCCTATTGGAACACACCTTCATCGCTTTATTTGCTCCGATGCTGACCCTGAAACCCTAATCCCACCGCCCCAATCCCCAAATCCTAAAACCCCAACCCCTCTACAAATGCAATTCGAATCGTGGATCCACATGCTCAAACCCGGTTTCTCACCCTCCGATGTCGACGAGGCTTTGCGAGCTCAATCGGACCCCGATCTTGCCCTCGACATTTTTCGGTGGACAGGTCAACAGCGCGGCTACAGGCACAACCATGTCACCTATCTCACTATGATAAAAATTGCTGTCTCCGGTAAGCGCTTCAGGCATGCCGAAACCCTAATTGAGGAAGTCATTGCCGGTGCATGCTCTAAAATGTTGAATTCCGAGGATTGTAAGCCCTCTTTGGAAACCTACACATTGTTGTTGAATGCCCTTCTTAGGAAATTCAACAAATTGACTGTATGCTATGTTTATTTGCATGCTGTCCGTTCATTAACCAAACAAATGAAGGTGTCAGGCGTAATACCAGATACATTTGCTTTGAATATGATTATTAAAGCATACTCCAAGTGTCTTGAAGTTGATGAAGCAATTAGGGTTTTTCGTGAAATGGGTTTGTATGGTTGCGAGCCAAATGCCTATACTTATGGCTATATTGCCAATGGGTTGTGTGAAAAGGGGAGGGTGAGTCAGGGTTTGGGGTTTTATAGGGAAATGAGGAGTAAAGATTTGGTGCCTAGTAGTAGTACCTACGTGATTCTGATTTGTAGTCTTTCAATGGAGAGGAGATTTGAAGAAGCTACGAAGATTTTGTTTGATATGTTGGGTAATTCTATGGCTCCTGATTTGTTAACTTATAAAACACTCTTAGAAGGATTGTCCAGGGAAGGAAAGTGCAATGATGCTTTTGAACTTCTTGAAGATTTGAGGAAGAAGGATGCTTGGATGGGAGAGAAGACTTACAAGACCTTGGTGAAAGGGTTGCATTTTTTGAGTCAGGAGTAG 1098 43.62 MGFLAASLRKSSRLCRPPFSIPLCFSLSNQLFLLPYSSPIGTHLHRFICSDADPETLIPPPQSPNPKTPTPLQMQFESWIHMLKPGFSPSDVDEALRAQSDPDLALDIFRWTGQQRGYRHNHVTYLTMIKIAVSGKRFRHAETLIEEVIAGACSKMLNSEDCKPSLETYTLLLNALLRKFNKLTVCYVYLHAVRSLTKQMKVSGVIPDTFALNMIIKAYSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIANGLCEKGRVSQGLGFYREMRSKDLVPSSSTYVILICSLSMERRFEEATKILFDMLGNSMAPDLLTYKTLLEGLSREGKCNDAFELLEDLRKKDAWMGEKTYKTLVKGLHFLSQE* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7484812 7485994 - Vvi18g636 Vvi18g636 780339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g636 365 TIGRFAM PPR: pentatricopeptide repeat domain 212 244 IPR002885 -
Vvi18g636 365 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Vvi18g636 365 TIGRFAM PPR: pentatricopeptide repeat domain 316 343 IPR002885 -
Vvi18g636 365 TIGRFAM PPR: pentatricopeptide repeat domain 281 313 IPR002885 -
Vvi18g636 365 Pfam PPR repeat 280 308 IPR002885 -
Vvi18g636 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vvi18g636 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vvi18g636 365 PANTHER OS06G0184866 PROTEIN 60 155 - -
Vvi18g636 365 PANTHER OS06G0184866 PROTEIN 155 364 - -
Vvi18g636 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 343 IPR002885 -
Vvi18g636 365 Gene3D Tetratricopeptide repeat domain 81 187 IPR011990 GO:0005515
Vvi18g636 365 Gene3D Tetratricopeptide repeat domain 305 360 IPR011990 GO:0005515
Vvi18g636 365 Gene3D Tetratricopeptide repeat domain 188 293 IPR011990 GO:0005515
Vvi18g636 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi18g636 365 Pfam PPR repeat family 207 255 IPR002885 -
Vvi18g636 365 Pfam PPR repeat family 312 359 IPR002885 -
Vvi18g636 365 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 155 364 - -
Vvi18g636 365 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 60 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g636 - - - vvi:100264218 708.753
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012675 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 28