Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g641 ATGGAGCCCAAAGAAGAGGATCCAACGCTCGCCAAGCTCCAATCAGCCTGTTCCGATCTGAAAAAACTGCTTCACAGCTCAGCCAGCATGGAAGCAAGTCTAGAAAAGATGGACAAAAATTTTGATACATTGCAAGAAACCCTTTCCACGGCTTCAAGAAGAGTAGGTCCTTTGCAGTCCTTGGCTATAGCTTCCAAAGCTCTCGACACCAGAATAAACCGGGCGGTTTCCCCGGCTCTCGCTCTTCTCGAAAGTTTCAAACTTGCGGAGTCTCTCCAACACAAGCTGCTTCAGCTCACCTCTGAATTATCGTCTAAGGACGCTCCCAAGAAGCGGCTCAAGGCACTGGTTAAGTATGTTGATTGTGTGGATAAACTCAATGCGGCCATCAATTCTATTAGTCTAGAGTGTGAGCCTGCGATTCAGAAGCTTCAAGAGGTGGTGGAGTTTTTGAGTAGGACCAGGGCGACTGATCAGTATAGGACGCATCGGCTGAGGGAGACTCTAATCACTCTTAAAGCGCTGTATGAAACAGAGGTGGATGCGATGAGATTTGATGGGTTGCTGGATGAAGCTTTGCTCAATTTGCAGGATGAGTATGAGCGTATACTGCAGCAGCTAAGGCATCGAAACATAGCTGAGTTGCAAGGAGATGCTCCGGCTGAGATGATGGCTTCTGATCTGGGTACTGAGCTGGAGGTTGAGGTTCTTAGACGGATTTCAGAAACTCTAGCTGCTAACGATTGTTTGGATATATGCATCGATATCTTTGTGAAGGTGAGGTATAGAAGGGCAGCAAAAGCCCTGATGAGACTGAACCCTGATTATCTAAGAACTTATACTCCCGAGGAAATTGACAACATGGAATGGGAGAGCTTGGAGACAGCAACAGCCCTTTGGATCCAACACTTCGAGCTTGCAGTTAAAACAGTCCTGGTGTCAGAAAAGAAACTCTGCAAGCAAGTTTTGTCAGGAATCATGGAGGGATTAATCTGGACAGAATGCTTCGTAAAGATTGCAGACAAGATCATGGCAGTCTTTTTCCGGTTCGGAGAGGGTGTAGCGAGGAGCAACAAGGAACCCCAGAAGCTGTTCAAGCTCTTAGACATGTTCGATTCATTGGAAAAGCTTAAAACCCAATTCTCAGAGATTTTCGAAGGTGAAGCTGGAGCTGACATCTGTTTGCGATTCCGAGAACTTACGAAGCTTCTCGTCCACTCTTCCAGCAAAGTATTTTGGGAGTTCGGCCTTCAAATTGAAGGCAATCAAGACGGGTTTCCGCCACTTCAAGACGGCTCAGTTCCAAAACTCGTCCGATACGCCATTAATTACCTTAAGTACCTGACCACCGAGAATTACAGTGCTCCCATGGCAAAGGTTCTTCGAACGGAGCAAATATGGAAAGCCGGCGTTTTATCTCAACCTGAAACAGATGAGAACTTACTCAAAGACGCCATTTCCAGCGTAATGGAAGCTATTCAGAGGAACGTGGAGTCGAAAAAATCCCGATGCCGAGACAAAATTCTTTCCCATGTCTTCGCCATGAACACGTACTGGTACATTTACATGAGAAGCAGAAGTTCAGAGCTGGGGAAGCTTTTAGGAGAGCAGTGGATGAAGAAGAAGTACAAGATCATTGCGGAAGAATCGGCATACATGTACCAGAAACAGGCTTGGGGAACTCTAGTGAATTTGCTGGAGAAAGAAGAATCGAACAGACAGACAAACAAAGAATCCATGGGAGCTGTGATAAGAGGGAAGATGGAAGCATTTCTAGAGGGTCTTGATGAAATCTCCAAAAGACATAGAACCTCTTATACCATTCCTGATGCAGATTTGAGAATACAGCTGAGGGAGGCGTCCGTTAAGCTGGTAGTTACGGCTTATACCGAATTCTTAACCTCTTACTCCTATTTTTTGCAGCCAAAATCCTACCTTCCTCCCGACTCAATCCAGGCCATGCTGGGTCAACTTTTCAACGATGGCCATCGAGTCCCTAGACTTTCCAAGGATCGGATGGCTGGAGACAACTCGGCCGGTGAGATCAAAGATTTTTCACGGTCCAGATCAAACGCCAGTGATCAGTGA 2088 46.31 MEPKEEDPTLAKLQSACSDLKKLLHSSASMEASLEKMDKNFDTLQETLSTASRRVGPLQSLAIASKALDTRINRAVSPALALLESFKLAESLQHKLLQLTSELSSKDAPKKRLKALVKYVDCVDKLNAAINSISLECEPAIQKLQEVVEFLSRTRATDQYRTHRLRETLITLKALYETEVDAMRFDGLLDEALLNLQDEYERILQQLRHRNIAELQGDAPAEMMASDLGTELEVEVLRRISETLAANDCLDICIDIFVKVRYRRAAKALMRLNPDYLRTYTPEEIDNMEWESLETATALWIQHFELAVKTVLVSEKKLCKQVLSGIMEGLIWTECFVKIADKIMAVFFRFGEGVARSNKEPQKLFKLLDMFDSLEKLKTQFSEIFEGEAGADICLRFRELTKLLVHSSSKVFWEFGLQIEGNQDGFPPLQDGSVPKLVRYAINYLKYLTTENYSAPMAKVLRTEQIWKAGVLSQPETDENLLKDAISSVMEAIQRNVESKKSRCRDKILSHVFAMNTYWYIYMRSRSSELGKLLGEQWMKKKYKIIAEESAYMYQKQAWGTLVNLLEKEESNRQTNKESMGAVIRGKMEAFLEGLDEISKRHRTSYTIPDADLRIQLREASVKLVVTAYTEFLTSYSYFLQPKSYLPPDSIQAMLGQLFNDGHRVPRLSKDRMAGDNSAGEIKDFSRSRSNASDQ* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7529282 7531698 + Vvi18g641 Vvi18g641 780344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g641 695 MobiDBLite consensus disorder prediction 667 695 - -
Vvi18g641 695 Pfam Exo70 exocyst complex subunit 300 655 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi18g641 695 PANTHER OS08G0519900 PROTEIN 7 660 - -
Vvi18g641 695 Coils Coil 34 54 - -
Vvi18g641 695 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 660 IPR004140 GO:0000145|GO:0006887
Vvi18g641 695 Gene3D Exocyst complex component Exo70 101 665 - -
Vvi18g641 695 SUPERFAMILY Cullin repeat-like 115 659 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g641 - - - vvi:100267832 1355.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g641 . . . . . . . . Cmo05g00136 . . . . . Sed11g0918 . . Bhi04g00438 Tan02g1722 Cmetu03g1922 . . . Lcy13g2139 Cla08g01629 Cam08g2133 Cec08g1718 Cco08g1840 Clacu08g1819 . Cre08g1602 . . Cone17ag0891 Cone20ag0237 . . . Cme03g02110 . . . . . . . . . . . . Cma05g00132 Car05g00114 . . . . . . . . . . . . . . . . . Lsi08g01534 Csa02g01886 Chy03g01600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31