Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g645 ATGGATGGGATTGAGTTGAATCTTGAAGGGGTTAAGTTCCGACTAGGTGTTGCAATTCCGGCGACAGATGATTTTCAAGGAATGAAGAAAGATTGGGAAGATTTCTATGCTTTTGGAAATCGCGGGTATTCAAGGGGTGGGAGTGGGAGGCAACAGCCAGATACAATTGTGTTGAGAGGGGCTCCATCGCGGTGGTTTGCAGAGCCACGGGTTTCATCGAAGCCGTCCATGTTGGTTACGCATACTATTTTTTCCACTTTTGGAAAAATAAGGAATCTTAATGTTGCTGAGGACAATGATCTAGGTGACAAAGAAGATGAGAATGATGGTGACATAGTTTCAGGCCTCCACTGTAAAATTGTGGTTCAGTTTGAGAGATACAGGGACTTCTATAATGCTCTGAAGGTGTTGTGTGGTCGTTCATTGCAGAAGCAAGGGTCTCGTTTGAAGGCTGATTATGAGGTAAGTTGGGACAAGGATGGCTTTTTCCGAAACACTAGAAGTCATGCACAAGAAAGGAGCAGCAGGATGCCAGAAATGGGAGCGGACAGCTATAAGAGTGGAGCTCCTAGACGCCAACCATACTTCCCCCACTCAGGATATGACAATTCACGTCCTAAGAGGTTCAAGGAGTAG 636 45.6 MDGIELNLEGVKFRLGVAIPATDDFQGMKKDWEDFYAFGNRGYSRGGSGRQQPDTIVLRGAPSRWFAEPRVSSKPSMLVTHTIFSTFGKIRNLNVAEDNDLGDKEDENDGDIVSGLHCKIVVQFERYRDFYNALKVLCGRSLQKQGSRLKADYEVSWDKDGFFRNTRSHAQERSSRMPEMGADSYKSGAPRRQPYFPHSGYDNSRPKRFKE* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7553695 7557541 - Vvi18g645 Vvi18g645 780348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g645 211 MobiDBLite consensus disorder prediction 167 211 - -
Vvi18g645 211 PANTHER B-LYMPHOCYTE ANTIGEN-RELATED 1 176 - -
Vvi18g645 211 PANTHER A KINASE (PRKA) ANCHOR PROTEIN 17A 1 176 - -
Vvi18g645 211 CDD RRM_AKAP17A 50 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g645 K13169 AKAP17, SFRS17; A-kinase anchor protein 17 - vvi:100264229 429.483
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g645 . . . . . . . . . . . . . . Sed10g1171 . . Bhi04g00434 Tan02g1725 Cmetu03g0164 . . . . . . . . . . . Cone4ag1617 Cone7ag1331 . . . . . Cme03g02107 . . . Bda01g01624 . . . . . . . . Cma05g00135 Car05g00116 . Cpe11g00116 . . . . . . . . . . . . . . . . Csa02g01889 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012528 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29