Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g647 ATGTTGTGTGCTTGCTCGGGAGAGCAATTCAAATTTGAAGATGCACCCCGGTCTCCAGAATCTCTGGCAACAAGAGATTTCTCGGCAAGCGGACTTTCATCCAGGACGGGGGATTGGGAGTCGAAATTTGAAGATACACAAGTTGATGAAGCTGAATCAACTCTAAGGGATGCTCTCTCCTTAAATTACGAGGAAGCCAGAGCTTTACTGGGGCGCCTAGAGTACCAGAGAGGGAACTTTGATGCTGCTTTTCAGGTGTTTCATGGGATTGACATTAGAGGGTTAACTCCAAGGATGACCAGGGCTATTGTTGAACGGACTTGGCAAAGAAAACCACGTACCAAGGGAGATATTGTATCTACCCAGGAAATGTCGATGCATTCTGTGAGCCTTCTTCTGGAGGCAATCTTACTCAAAGCAAAATCACTTGATGAACTGGGGAGAACTGGAGAGGCTGCAAAAGAGTGCAAAATAATTCTGGACACTGTTGAATCGGCACTGCCCAATGGAATGCCAGAGGGCATTGGTGAAGACTGCAAATTGCAGGAGATGTTTCACAAAGCATTAGAGCTGCTCCCAAAGCTGTGGACAAAGGCAGGCTGTCTTGATGAATCGATTGCTGCATATCGTCAAGCTCTAGTAAGGCCCTGGAATTTGGATCCTCGGAGGTTGGCCAGTGTACAAAAGGATTTGGCTGCCATATTACTGTATGGTGGTGTTGAAACAAGCCTTCCTCCTCAATTGCAACAGGCCCTTCCTGGTGTCTATAACCGAGCTGAAAGGTGGTATTTTCTTGCTCTTTGTTACAGTGCCGCAGGTCAGAATGAAGCAGCATTGAACCTTCTAAAGAAGGTTTCCGGTTGTTCTGAAGCAAAGCACAAACCTCATTTGCCTTCTTTTTTGTTGGGAGCCAAATTGTGTTCGCAAGATCCAAAGCATGCTCATGAAGGGATAAATTTTGCTCGTAAAGTGATTAGTTCCCATGATCAAACCAAGCATTTCATGGGTGAGACACATAAATTCCTTGGTATTTGCTATGGGAATGCAGCAAGAGCTTGTGTGTTGGATTCTGAAAGAGTTGCCCTGCAGACAGATTCTTTGAACTCTCTGAACCAGGCGTCTCTTATTGGGCATAAGGATCCAGAATTAATATTTAGCCTGGCTTTGGAAAATGCTGTGCAAAGAAATCTAGATGCAGCTTTTAGCAATGCAATTATGTACTCAGATATGGTGGCTGGGAGTTCAGGAAGAGGTTGGAAGCTGTTGGCTCTTGTAGTATCTGCAGAGCAACGGTTCAAAGATGCTGAAACCATAGTCGATCTTGCTTTGGATGAGGCTGGAAGGATTGATCAGTTAGAGCTTCTTAGGCTGAAAGCTGTGCTTCAAATTGCTCAGGAGCAGCCCAAACAAGCAATAGAGACGTATAGAATTTTGCTAGCTCTGATTCAAGCACAGAGGGAGGTTCAAGCCAATAAATTTCATTCAGAGGTATCAGCAGAAAGAAACTTGGAAACACAAACATGGCAGGATTTGGCTAACATCTATACGAAACTGGGATTGTGGTCTGATGCAGAAATTTGTTTGGATAAAGCAAAGTCCATTGAATTTTATTCTTCTAGAAGTTGGCATAAAACAGGTATTTCGTTAGAAGCTCAATCACTGTACAAGGAAGCCCTTGTGTCCTTTTCAGTTTCTCTGTCAATAGAACCAGATTATGTTCCTAGCATTGTTTCAACTGCAGAAGTACTGATGAAATTTGGTAAACCATCCCTCCCAATCGCAAGAAGCTTTTTGATGAATGCCTTACGATTAGAACCCACGAATCACGAGGCATGGTTGAACCTTGGATTGGTTTCAAAGATGGAAGGCTCCTTACAACAAGCAGCAGACTACTTCCAGGCAGCATATGAGCTCAAGTTGTCAGCGCCAATTCAAAGCTTTGTATGA 1947 43.91 MLCACSGEQFKFEDAPRSPESLATRDFSASGLSSRTGDWESKFEDTQVDEAESTLRDALSLNYEEARALLGRLEYQRGNFDAAFQVFHGIDIRGLTPRMTRAIVERTWQRKPRTKGDIVSTQEMSMHSVSLLLEAILLKAKSLDELGRTGEAAKECKIILDTVESALPNGMPEGIGEDCKLQEMFHKALELLPKLWTKAGCLDESIAAYRQALVRPWNLDPRRLASVQKDLAAILLYGGVETSLPPQLQQALPGVYNRAERWYFLALCYSAAGQNEAALNLLKKVSGCSEAKHKPHLPSFLLGAKLCSQDPKHAHEGINFARKVISSHDQTKHFMGETHKFLGICYGNAARACVLDSERVALQTDSLNSLNQASLIGHKDPELIFSLALENAVQRNLDAAFSNAIMYSDMVAGSSGRGWKLLALVVSAEQRFKDAETIVDLALDEAGRIDQLELLRLKAVLQIAQEQPKQAIETYRILLALIQAQREVQANKFHSEVSAERNLETQTWQDLANIYTKLGLWSDAEICLDKAKSIEFYSSRSWHKTGISLEAQSLYKEALVSFSVSLSIEPDYVPSIVSTAEVLMKFGKPSLPIARSFLMNALRLEPTNHEAWLNLGLVSKMEGSLQQAADYFQAAYELKLSAPIQSFV* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7566478 7570535 - Vvi18g647 Vvi18g647 780350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g647 648 PANTHER PROTEIN NPGR1 248 648 - -
Vvi18g647 648 PANTHER PROTEIN NPGR1 1 250 - -
Vvi18g647 648 SUPERFAMILY TPR-like 46 284 IPR011990 GO:0005515
Vvi18g647 648 MobiDBLite consensus disorder prediction 23 37 - -
Vvi18g647 648 ProSiteProfiles TPR repeat profile. 609 642 IPR019734 GO:0005515
Vvi18g647 648 Gene3D Tetratricopeptide repeat domain 34 252 IPR011990 GO:0005515
Vvi18g647 648 Gene3D Tetratricopeptide repeat domain 362 643 IPR011990 GO:0005515
Vvi18g647 648 PANTHER PROTEIN NPG1 248 648 IPR043376 -
Vvi18g647 648 PANTHER PROTEIN NPG1 1 250 IPR043376 -
Vvi18g647 648 SUPERFAMILY TPR-like 419 639 IPR011990 GO:0005515
Vvi18g647 648 SMART tpr_5 539 572 IPR019734 GO:0005515
Vvi18g647 648 SMART tpr_5 416 449 IPR019734 GO:0005515
Vvi18g647 648 SMART tpr_5 609 642 IPR019734 GO:0005515
Vvi18g647 648 SMART tpr_5 259 292 IPR019734 GO:0005515
Vvi18g647 648 SMART tpr_5 505 538 IPR019734 GO:0005515
Vvi18g647 648 SMART tpr_5 452 485 IPR019734 GO:0005515
Vvi18g647 648 MobiDBLite consensus disorder prediction 14 44 - -
Vvi18g647 648 SUPERFAMILY TPR-like 257 482 IPR011990 GO:0005515
Vvi18g647 648 ProSiteProfiles TPR repeat profile. 539 572 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g647 K21843 - vvi:100241952 1202.19