Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g648 ATGTGGAAGGATTTGGGAGATAGAGAAGCGGGTAAACTCCGCCCTTATTCCTTTTCCAATCGCATTACATCCGATCGCATCGCTTCTCTTCAACTTTCTAATTATAAAGAGATCGTCTCTCCTCACAGAGGCGCTGTTAACTCCCTTCAGGTTGATTTGACAGAGGGGCGGTATTTATTATCCGGTGCATCAGATGCATCAGCTGCTGTTTATGATATTCAACGTGCCACAGAATATGAGGGGGGTAGTCTGGTTGCAAAACACAAGAGCATTTTTGTTGTTGACAAGCAACATGAGCATGGACACAAGTATGCTATATCCTCAGCCATATGGTATCCCATTGACACAGGGCTGTTCATCACGGGTTCATATGATCATTACATCAATGTTTGGGATACAAATACCACACAGGTAGTGGTGAATTTTAAAATGCCTGGAAAGATTTATAGGACTGCAATGTCTTCACTGGCGACAGCTCACATGCTTATTGCTGCTGGAACCGAAGATGTTCAAGTTCGCCTTTGTGATATTGCTTCAGGAGCTTTTGCTCACACTTTATCTGGTCATCGTGATGGTGTAATGACAGTTGAATGGTCTACTTCTAGTGAGTGGGTTTTGGTAACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGTGCTGGATGTTTTCTTGTTTTAGATCAGTCCCAATCACAGCTTGGTAGACGCCCACCTCTCCTTGAATGCTCTACTGCGAATAAGGCTCCAATGTCAAAGTCCTTTCCAGCAAGCCAAAGTGTAAATGTTAGATCCCGTGCACCACAAAGGAAATTTGCTTATGGGAATGGTTCAAAACAGTCAGCTACTGGTAGAACTTCAAGTCAAGCCAAGGGATTGGTCAGGCAGAGACTACATCCAGGGATGTTATCTAGTCAGGACCGTGCCACTTCTCATTATGGTGCTGTTACTGGATTAAAAGTAACTGACGATGGCATGTATCTTCTGAGTGCAGGTTCTGATTCAAGATTAAGGTTGTGGGATATTATGTCCGGCTGCAACACACTAGTGAACTTTGAAACTGTGCGGCTACAAACCAGCAAAGCAATGCAGTTGGCTATAACTAATGATTCAGCACTTGTCTTTGTTCCTTGCATGACAGCCGTAAAAGCATTTGATGTCTGGTCAGGTAAGACAGCCATGACATTTCGTGGCCACTACGAATATGTGAATTGTTGCTGGTTAAGCTTGCAGGATCAGGAATTATATACAGGCGGCAATGATAGACAAATTCTTGTTTGGTCACCATCTAGATTGAATTTTGATGAAATGGATCATGGCAGCAGGGAAGAGCCGATTCATGCACAGGATCAGGATAATTGGAGCGATTGA 1377 43.72 MWKDLGDREAGKLRPYSFSNRITSDRIASLQLSNYKEIVSPHRGAVNSLQVDLTEGRYLLSGASDASAAVYDIQRATEYEGGSLVAKHKSIFVVDKQHEHGHKYAISSAIWYPIDTGLFITGSYDHYINVWDTNTTQVVVNFKMPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRPPLLECSTANKAPMSKSFPASQSVNVRSRAPQRKFAYGNGSKQSATGRTSSQAKGLVRQRLHPGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQTSKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTGGNDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7574564 7580096 + Vvi18g648 Vvi18g648 780351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g648 458 Pfam WD domain, G-beta repeat 100 132 IPR001680 GO:0005515
Vvi18g648 458 Pfam WD domain, G-beta repeat 313 343 IPR001680 GO:0005515
Vvi18g648 458 Pfam WD domain, G-beta repeat 184 219 IPR001680 GO:0005515
Vvi18g648 458 Pfam WD domain, G-beta repeat 394 430 IPR001680 GO:0005515
Vvi18g648 458 SUPERFAMILY WD40 repeat-like 39 432 IPR036322 GO:0005515
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Vvi18g648 458 Gene3D - 279 433 IPR015943 GO:0005515
Vvi18g648 458 Gene3D - 2 265 IPR015943 GO:0005515
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515
Vvi18g648 458 MobiDBLite consensus disorder prediction 253 293 - -
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 221 IPR001680 GO:0005515
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Vvi18g648 458 MobiDBLite consensus disorder prediction 276 293 - -
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Vvi18g648 458 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 458 IPR042238 GO:0006283
Vvi18g648 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 347 - -
Vvi18g648 458 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Vvi18g648 458 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Vvi18g648 458 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Vvi18g648 458 MobiDBLite consensus disorder prediction 253 268 - -
Vvi18g648 458 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Vvi18g648 458 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Vvi18g648 458 SMART WD40_4 179 219 IPR001680 GO:0005515
Vvi18g648 458 SMART WD40_4 32 72 IPR001680 GO:0005515
Vvi18g648 458 SMART WD40_4 304 343 IPR001680 GO:0005515
Vvi18g648 458 SMART WD40_4 391 430 IPR001680 GO:0005515
Vvi18g648 458 SMART WD40_4 87 132 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g648 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - vvi:100247086 932.554
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36