Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g649 ATGATAAGAGTGGGAAGTACCTTTCAAGCTATGGAAAAACTTTTTGGTTTCATTGCTTGTTGCTTTGTCTGGTTCAATAATGCCGCTTATCCTAGTGAGTTTTACGGGCCAACTAGACCCGAAGCTTCTCAACCTCAAGCATTTACTTTTCTAGTTAGAGACCAGCATCTTGGGGCTAATGTGGGATCCGCTCAAGGACCCACTGGTTTAGGTAAATATCTAATGCATTCCCCGACTAGAGAAGTCATTTTTAGAAGAGAAACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCTCTAAGGGGTCCCAATGGTTTGGACTTGAGTAGGCTGAAAAAAAACAGAAGGCAAATCGATATAGGCTTCTCATGGTGTAACCGTGTAAGCATCTACCTCACAGACATGGCTGCGAGGGCGGGGAAGTCGCAGGAGATGGATCCCGGAATATGGGGCCACTTGCCGGTGGAGCTTCTGGAACATGTGCTATCTTTTCTCCCTCTCAAAAGCTTCTTCAATCTCCTATGTACCTGTAAACGCTTCAAATCTTTAATTTACTCTCCTTCATTCCTGGCCAAGTATTCTCCTTCTTCTTCTTCTTCTTCTTCTTCACCCGCTCTCTCATCTTTTCTCTTACTTTCTCATCCACAGTTCTACCGCCACCGACTCCCTCTCTATGACTCAGCCATTGGCAACTGGCGCAATTTATCTCTCACCTGCTCTATTCTCTTACCCTACGCCGCCACCACCGCGATCACGCTGCTCTCCGCCGCCAATGGACTCCTCTGCTTCTCTTTACCCAACTCATCTTCTTTCCTGGTCTGCAATCTCTTGGTAGGATCCTCCAGAGTCCTCCAATTCCCTGGATACCCTTTTGCCTTTGAAATGCTGACCTTGGTTCCTGCCCCGGATGGGTACAAGATCTTCATGATCGCTTCTGGGTCCTCTTCCAACAACGCTTGGGTGTATGATTCCGGGGTTCATTCATGGCGAGAATTCCAGGGTTTCGATCCGACTTTGAGCGACAATTGTCATCAAGGAGTTTACTGTAATGGGGTTCTGTATTTTTGTACGTCTGAGCCGTTTTCCATAGTGTGTTTTGATTTGGAGAGTGGGGTGTGGGACAGATCGGTTGTGGAGTTGCCGGGGGAGCTGACGTTTGTGAAATTAGTGAGCGATGGAGAAGGGAAGCTGTATTTGGTTGGTGGGATTGGGAGGAATGGGATTTCCAAAAGTATGAAATTGTGGGAATTGGAAGGAGAGAATTGGGTGCTGGTGGAGAGTCTGCCGGAATTCATGTGCCAAAAATTGGTTTCCGTGTGTTATCACAATTACGAGCATGTGTATTGCTTTTGGCACCAGGAGACGATCTGTGTATGCTGCTATACTTGGCCCGAGATTTTGTATTACAAGGTCGCTAGGAGGACTTGGCATTGGCTGCCTAAATGCCCTTCATTGCCTGACAAATGGAGCTGTGGTTTCAGGTGGTTTTCTTTTGTTCCAGAATTATATGCGCAATGTGGTTGTCTGCCATCTGTCCTCCTAGTGGCTAGCCTTCTGTAA 1566 47.0 MIRVGSTFQAMEKLFGFIACCFVWFNNAAYPSEFYGPTRPEASQPQAFTFLVRDQHLGANVGSAQGPTGLGKYLMHSPTREVIFRRETMRFWDLHAPWLEPLRGPNGLDLSRLKKNRRQIDIGFSWCNRVSIYLTDMAARAGKSQEMDPGIWGHLPVELLEHVLSFLPLKSFFNLLCTCKRFKSLIYSPSFLAKYSPSSSSSSSSPALSSFLLLSHPQFYRHRLPLYDSAIGNWRNLSLTCSILLPYAATTAITLLSAANGLLCFSLPNSSSFLVCNLLVGSSRVLQFPGYPFAFEMLTLVPAPDGYKIFMIASGSSSNNAWVYDSGVHSWREFQGFDPTLSDNCHQGVYCNGVLYFCTSEPFSIVCFDLESGVWDRSVVELPGELTFVKLVSDGEGKLYLVGGIGRNGISKSMKLWELEGENWVLVESLPEFMCQKLVSVCYHNYEHVYCFWHQETICVCCYTWPEILYYKVARRTWHWLPKCPSLPDKWSCGFRWFSFVPELYAQCGCLPSVLLVASLL* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7580652 7584189 + Vvi18g649 Vvi18g649 780352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g649 521 Gene3D - 140 191 - -
Vvi18g649 521 Gene3D photosystem ii from thermosynechococcus elongatus 37 134 IPR044900 -
Vvi18g649 521 SUPERFAMILY F-box domain 146 227 IPR036047 GO:0005515
Vvi18g649 521 SUPERFAMILY Galactose oxidase, central domain 258 486 IPR011043 -
Vvi18g649 521 Pfam F-box domain 154 191 IPR001810 GO:0005515
Vvi18g649 521 PANTHER F-BOX/KELCH-REPEAT PROTEIN 151 506 - -
Vvi18g649 521 Pfam Photosystem II protein 13 100 IPR000932 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Vvi18g649 521 SUPERFAMILY Photosystem II antenna protein-like 14 136 IPR036001 GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684
Vvi18g649 521 ProSiteProfiles F-box domain profile. 149 195 IPR001810 GO:0005515
Vvi18g649 521 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 151 506 - -
Vvi18g649 521 SMART fbox_2 155 195 IPR001810 GO:0005515
Vvi18g649 521 Gene3D - 224 496 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g649 - - - vvi:100260898 764.222
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g649 . . . . . . . . Cmo05g00142 Cmo12g00538 . . . Car12g00542 Sed03g0283 . Cpe07g00516 Bhi04g00416 Tan02g1736 Cmetu03g0956 . Hepe08g1334 . Lcy13g2132 Cla08g01621 Cam08g2123 Cec08g1708 Cco08g1832 Clacu08g1809 . Cre08g1590 . Cone7ag1337 . . . . . Cme03g02102 . . . . . . . . . . . Cma12g00598 Cma05g00139 Car05g00121 . Cpe11g00120 . . . . . . . . . . . . . . . Lsi08g01527 Csa02g01895 Chy03g01591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007973 0 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 35