Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g651 ATGAGTAACAAACGCACTAAGGACAAGAAGGTGGTGTTGGGTAGCGGGAGAATTGGTACTTGTGATGACGTGGAGCTGTGGAACGCGAAGAGATGGTGTCGGAGAATTTCGTCAACGGAGACCGAGATTCCGGCCAACTATATCTACATGGGGCAGAGCTCCGGTGATCATAACGATTATTCCTCGACTTTCAGTGACTGTAACAGCGATAGATCCGGTGAGTTTCCGACGACATCGTCTCAGGGCCGCCGACTGCTGCTAGCCTGCGCTGCGGACAATTGCGATGATCTGATCCGGCAGCTCGTTTCCGATCTCAACTCTTGTTCGATTGATGAGCAAAAGCAAGCCGCCATGGAGATCAGGCTCCTCGCCAAGAACAAGCCCGAGAATCGTCTCAAGATCGCTGGGGCCGGGGCTATCAAGCCGTTGATTTCTCTTATCTCTTCCTCTGATGCTCAGCTTCAAGAGAACGGAGTTACGGCGATTTTGAATCTCTCTCTGTGCGACGAGAATAAGGAACTGATAGCCTCATCGGGAGCTATTAAACCACTGGTTAGAGCTCTCAAGACTGGGACATCAACAGCGAAGGAGAACGCAGCTTGTGCTCTGCTCCGCTTGTCACAGATAGAGGAGAACAAGATTGTAATCGGAATGGCGGGAGCGATTCCGCTGCTAGTGAATCTATTAGGGTATGGTAGTTTTCGGGGGAAAAAGGACGCATCGACGACTCTATATTCGCTATGTTCGGTTAAAGAGAACAAAATCAGAGCAATTCAAGCCGGGATCATGAAGCCTCTGGTGGAATTGATGGCGGATTTTGGGTCCAATATGGTGGATAAAGCAGCTTACGTGTTAAGCCAATTGGTTTCTCTCCCTGAAGGCAAAACTTCTTTGGTTGAGGAAGATGGTATTCCGGTACTCGTGGAGATCCTTGAAGACGGATCGCAGAGGCAGAAAGAAATTGCAGTTGCAATTCTCTTACAGATTTGCGAGGATAGCTTGGCTTATCGCAATATGGTAGCCCGCGAAGGAGCAATTCCTCCTCTGGTCGCATTGTCACAGTCCAGCGCCAATCGCTCTAAACAGAAGGCGGAGGCACTCATTGATCTTCTACGGCAACCAAGATCCGGCAACGTCGCTGCCAGAACGTCAGATGTGTCAGTCTAA 1167 49.87 MSNKRTKDKKVVLGSGRIGTCDDVELWNAKRWCRRISSTETEIPANYIYMGQSSGDHNDYSSTFSDCNSDRSGEFPTTSSQGRRLLLACAADNCDDLIRQLVSDLNSCSIDEQKQAAMEIRLLAKNKPENRLKIAGAGAIKPLISLISSSDAQLQENGVTAILNLSLCDENKELIASSGAIKPLVRALKTGTSTAKENAACALLRLSQIEENKIVIGMAGAIPLLVNLLGYGSFRGKKDASTTLYSLCSVKENKIRAIQAGIMKPLVELMADFGSNMVDKAAYVLSQLVSLPEGKTSLVEEDGIPVLVEILEDGSQRQKEIAVAILLQICEDSLAYRNMVAREGAIPPLVALSQSSANRSKQKAEALIDLLRQPRSGNVAARTSDVSV* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7595871 7598628 + Vvi18g651 Vvi18g651 780354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g651 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 180 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 209 249 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 291 331 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 332 372 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 250 290 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 168 208 IPR000225 GO:0005515
Vvi18g651 388 SMART arm_5 127 167 IPR000225 GO:0005515
Vvi18g651 388 Gene3D - 291 381 IPR011989 -
Vvi18g651 388 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 40 381 - -
Vvi18g651 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 303 IPR000225 GO:0005515
Vvi18g651 388 PANTHER U BOX DOMAIN-CONTAINING 40 381 - -
Vvi18g651 388 Gene3D - 90 290 IPR011989 -
Vvi18g651 388 SUPERFAMILY ARM repeat 93 364 IPR016024 -
Vvi18g651 388 Pfam Armadillo/beta-catenin-like repeat 211 249 IPR000225 GO:0005515
Vvi18g651 388 Pfam Armadillo/beta-catenin-like repeat 169 207 IPR000225 GO:0005515
Vvi18g651 388 Pfam Armadillo/beta-catenin-like repeat 128 166 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g651 - - - vvi:100252212 644.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34