Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g655 ATGGAGAGGGATTCTTACTCTAGCCTTCTCTGTTTGGATGAGGATGTAGTGGATGAAGAAGCCTTCATTAGCTTCAAAAACTGCACACCTTCGGATACTGAAGATGATGAGTACGTACAACTGTTGGTTGATAGAGAGATGAGTTTTGGGATTAAAACAAACCATTCATTCTTGATTTTGAACTGGGTTAAGCTTGCTCGTCTCGACGCAGTCGCATGGATTCTCAGAACAAGAGCGGTGTTTGGATTCCGCTTCCAAACGGCCTATCTGTGTGTGGCTTATCTGGATCGGTTTCTTTCGCGGCGAGCCATTGATAGCGACAAAACATGGGCGATTCGATTGCTGTCAGTGGCGTGTCTTTCTTTGGCGGCGAAGATGGAGGAATGCAGAGCTCCGGCGCTATCGGAATTCGCTGTTGAAGAATACAATTTTGAGAGCAAGGTGATTCAGAGAATGGAGCTCTTGGTATTGAATACATTGGAATGGAGGATGGGTTCAATTACTCCTTTTGCTTTTATTCATTACTTCATCACAAAATTTTGCAATCAATCTCCACCACCAAATGTGGTATCAAGGACTGTACAACTCACCATGGCTATAATGAGAGAGATAAATCTAATGGATCATCGACCATCTGTTATTGCCGCTGCAGCAGTATTGGTGGCATTGGATCAGAGATTAACAAGAAATGAATTGGAGTCTAAGATGAATGCCATCTCTTCATGTGGATCTCTTCAACCTGAGGATGTGTTTTCATGCTATAGTGTAGTGCAGGGGCTTGACAAGGAGAAGTGTGCACTTTCACTAAACCCGTCCACTACCCAATTGAGGCCAGCCGTTGATGTGCATGAAAATTCTTCAGTTACTTCTGCCGCTAGCACCAAAAGAAAAAGGCTTACCTTCTATGATTGTGATCCAAATTATGGAATACCCAATGAGAAGCGACCTCGCTAG 954 43.71 MERDSYSSLLCLDEDVVDEEAFISFKNCTPSDTEDDEYVQLLVDREMSFGIKTNHSFLILNWVKLARLDAVAWILRTRAVFGFRFQTAYLCVAYLDRFLSRRAIDSDKTWAIRLLSVACLSLAAKMEECRAPALSEFAVEEYNFESKVIQRMELLVLNTLEWRMGSITPFAFIHYFITKFCNQSPPPNVVSRTVQLTMAIMREINLMDHRPSVIAAAAVLVALDQRLTRNELESKMNAISSCGSLQPEDVFSCYSVVQGLDKEKCALSLNPSTTQLRPAVDVHENSSVTSAASTKRKRLTFYDCDPNYGIPNEKRPR* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7627109 7628513 - Vvi18g655 Vvi18g655 780358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g655 317 Gene3D - 166 254 - -
Vvi18g655 317 Gene3D - 66 165 - -
Vvi18g655 317 PANTHER CYCLIN-D5-1 27 297 - -
Vvi18g655 317 CDD CYCLIN 67 157 IPR013763 -
Vvi18g655 317 SUPERFAMILY Cyclin-like 27 164 IPR036915 -
Vvi18g655 317 Pfam Cyclin, N-terminal domain 66 164 IPR006671 -
Vvi18g655 317 SMART Cyclin_C_2 167 292 IPR004367 -
Vvi18g655 317 SMART cyclin_7 72 158 IPR013763 -
Vvi18g655 317 Pfam Cyclin, C-terminal domain 167 261 IPR004367 -
Vvi18g655 317 ProSitePatterns Cyclins signature. 67 98 IPR006671 -
Vvi18g655 317 PANTHER CYCLINS 27 297 IPR039361 -
Vvi18g655 317 SUPERFAMILY Cyclin-like 150 257 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g655 K18811 CYCD5; cyclin D5, plant - vvi:100248932 629.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g935 Vvi18g655 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40