Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g657 ATGAAAAGTAAAGGTAAATTTGCTGGAACTAACCCTTCCAAGATCAAAATGTCGAACCGATATGGGCAGAACAAGGGTTTCACCAAAACCCAGAAGAAGTTCGTTCCCAAAACCCAAAGAGAAGGACACACCCCCAATCCCACTCTTTCTACTTCTCTCAGACAATCCGCCGCCGCCGCCTCCTCTTCCACTGGTAAGGTTGTATCGGCTGAGAACGCTGATTCAGTTTCAAGCAGGGGTGAGGGGGGCAGTTTCCTCAATTACTTGCCCCAAGATGAGGCGGTGGCTTCCGGCCTTGGTGCCCAGGAAGGCGGTTTGGATCCCCTGGAGTCCCAGCGTGTTGTGGATCTTTCGAACAAGGAGCTGTCTCGCCTTCTCAAATTGAGTCCTAGAGAGTTTTGGAAACAAGTGGCCAGTGACAATTCACTGCATGATTTTCTGGATAGCTTCCTACAATTTAGGAGTAGATGGTATGATTTCCCTCATCATGGAGTGAAAGGAATGGTTGCCGGGGTCATTGTTGGAGACTTTGAATTAAGCCGACGTGTCTTCATGGTCTTGTTTCGCATATCTTCCAATAGGGATCCTGGTGCTCGGGCTGTTGACACCCTCAGTTCAAAGGATCATGCAGTCCTTTTGCAGGAAAAGAGGCTGCTTGATTTACCCAGATTGTTAGATATATGTGCTATATATGGTTGTGAAAATGAAGATTTGACCAGATCACTGGTTGTGAATGCTTTGAAAGCACAGCCTTGGATCCATGATAATTTAATTGCAGTGATGTCTCATTTCTTGAGCATTGTCCACACAATGCACCAACGTTGCAGCTCGTCTTTGGAGGCTCTTTTTTCTTCTGGAGGCTATGAAGACCAGGGATCCATCCAACTTTATTCAGATTTTTTAGAGGTAATGGACTTCATTAATGATGCCATTGTTTCCTTGGATGCATTTGTGCATGCATACAAACCCGCAGCAGTGTTCTTCTCTTGCCCTGTTGAGATGAGTTATGGGAATGAGGAATTGCTCCACACTCTTGCAAGACTGTACAATTCATTACTACCATCTATACAGCAGGGATTTCAAATCCTGTTTACAGCTGGGGATGTACTTCAGAAGTCATTTGGTATTACCCTTTCAGATATTGCTATTTGTTTGAAGATGGTGTCAATGAGGATCATTGAGCTTGGTTGGAAAGTATTGGACTTATGCTATCTAAGTAATACGTTATTTGAAGTCAGTCTCCCCCTTCCAGCTGCCACAAAGATATTTCCTGCTAAAGTTGAGGATCCTGTCATAAGGGCAGATATTTTAATTCAGACTATTAGAGAGATCAATGGATTTCCAGAACATGTTCAGGAAAACCAGCCCAAAAACCAGCCCAGGGAAACATTTCTTCAAAATATTGAAAAGAATTACAAGATGATGAGAAAACTTGAGAGTTTGCATGATACTGGATGGATTTTCATGGACGATGAACAATTTCATTATTTATCTGGCATCTTAGCACTTCCTTTAGAAGCTAGTGTTAAGAAGACATCTTATGAGCCAATCCCTGCAACAAGTGACAAGATGCATGTGGATGAAGATGCTGCAATTATGGAGTCCAAAATAAGTCAAATTAGAGATCTATTCCCTGATTATGGTAAAGGGTTCTTGTCTGCATGTCTTGAAGCGTATAACCAGAATCCAGAAGAGGTGATTCAAAGGATTCTAGAGGGAACCTTGCATGAAGATCTGCAGTCCCTGGACACTTCATTAGAGACTATCCCACAACCCAAGTCTATTCCATCTGTGAGCAAGAATGATAAGGGAAAAGAGAAGTTATTTGAATCAACGGCTCTATCCTCCGCTAATGCTGTAACTGTATCAGGGGAGCCACAAACTGAGAGCTCATCATTTTCATTCTCATCTTCAGTTGGGAGGTACACAAGGAAGTCTAAAGTTAATTTACCCAATTATAAGACCCTTGATTCTAGAAGTGAGCAGGATTCTGCAAAAACTGCAGCTCTAGTTATGCAGTATGAGTATGAAGATGAGTATGATGACTCTTTTGATGATTTAGGTCTGAGTGTTGTGGAGTCAGGATTAGCAGAAACTGAGATATTGGAAGACAAAATCAACTCTAATCTTGGAAAACCTTGGGGGACACAAAGTGAAACATTTGGTCCAAGTGATTCTTCGAAATGGAACTCACGGAAGAAGCCCCAATTCTATGTGAAGGATGGTAAGAATTACAGTTACAAAATTGCAGGTTCAGTTGCTGCTGCAAATTGTATTGAAGCATCAATAGTTAATCAAGCCCAGAAAGAATTAATCCATGGCCTTGGTCGAGGTGGCAACCTTCCTCTAGGTGCAGTTAAGAAGCTGACAGAGTTAAATGAGGATGAAGATGAACAGTCTGAAATTGTGGAGATGGGAGGAAGAGGGAAGCCAGGGAATTTCAGGGGCAGGGGAAGGAGGGGAGGGAGGGGGAAGAAATTACAGGAAGGATCAGGCCATGAAAAAGCATTTTTCGGGATTGACTGGTTTCTAGTTTGGTTTTTATTTTGTATTTATTTCTTTTGGTATCACCAACTTTTTCCCTTTACCAAAAAACCAGATGTATAG 2607 42.31 MKSKGKFAGTNPSKIKMSNRYGQNKGFTKTQKKFVPKTQREGHTPNPTLSTSLRQSAAAASSSTGKVVSAENADSVSSRGEGGSFLNYLPQDEAVASGLGAQEGGLDPLESQRVVDLSNKELSRLLKLSPREFWKQVASDNSLHDFLDSFLQFRSRWYDFPHHGVKGMVAGVIVGDFELSRRVFMVLFRISSNRDPGARAVDTLSSKDHAVLLQEKRLLDLPRLLDICAIYGCENEDLTRSLVVNALKAQPWIHDNLIAVMSHFLSIVHTMHQRCSSSLEALFSSGGYEDQGSIQLYSDFLEVMDFINDAIVSLDAFVHAYKPAAVFFSCPVEMSYGNEELLHTLARLYNSLLPSIQQGFQILFTAGDVLQKSFGITLSDIAICLKMVSMRIIELGWKVLDLCYLSNTLFEVSLPLPAATKIFPAKVEDPVIRADILIQTIREINGFPEHVQENQPKNQPRETFLQNIEKNYKMMRKLESLHDTGWIFMDDEQFHYLSGILALPLEASVKKTSYEPIPATSDKMHVDEDAAIMESKISQIRDLFPDYGKGFLSACLEAYNQNPEEVIQRILEGTLHEDLQSLDTSLETIPQPKSIPSVSKNDKGKEKLFESTALSSANAVTVSGEPQTESSSFSFSSSVGRYTRKSKVNLPNYKTLDSRSEQDSAKTAALVMQYEYEDEYDDSFDDLGLSVVESGLAETEILEDKINSNLGKPWGTQSETFGPSDSSKWNSRKKPQFYVKDGKNYSYKIAGSVAAANCIEASIVNQAQKELIHGLGRGGNLPLGAVKKLTELNEDEDEQSEIVEMGGRGKPGNFRGRGRRGGRGKKLQEGSGHEKAFFGIDWFLVWFLFCIYFFWYHQLFPFTKKPDV* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7650876 7691973 - Vvi18g657 Vvi18g657 780360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g657 868 MobiDBLite consensus disorder prediction 41 80 - -
Vvi18g657 868 ProSiteProfiles CUE domain profile. 532 575 IPR003892 GO:0043130
Vvi18g657 868 MobiDBLite consensus disorder prediction 12 33 - -
Vvi18g657 868 CDD CUE_ASCC2 534 573 IPR041800 -
Vvi18g657 868 MobiDBLite consensus disorder prediction 1 80 - -
Vvi18g657 868 Pfam CUE domain 534 574 IPR003892 GO:0043130
Vvi18g657 868 SUPERFAMILY UBA-like 532 589 IPR009060 GO:0005515
Vvi18g657 868 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 23 828 - -
Vvi18g657 868 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 23 828 - -
Vvi18g657 868 Gene3D - 532 575 - -
Vvi18g657 868 MobiDBLite consensus disorder prediction 804 829 - -
Vvi18g657 868 SMART cue_7 532 574 IPR003892 GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g657 K18667 ASCC2; activating signal cointegrator complex subunit 2 - vvi:100854438 1533.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59