Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g658 ATGTCGGCCGAGCAGCCCCTGAAGAAGCGAAAGCTGCATGATCATGTTTCCGAACCTCCACCGGAGCCGCAGCCGCCGCCGCAAACCGCTGCTCAGCAGCGCTCGGCAACTCCACCGCTGTCGCAAGAAGAAATTATGCGGAGACGAAGAAACAGAGAAGAGATTCGTAATGTGTACGAATGCTACAAGCGAATTAAGTCGTGTATCGCTCATGAAGATGCTCGCTTAATGCCGGAACTCGAGCAGGCCTATCTCTCTCTCATCACTGCTTCCAGAGGTTGCACAAGTGCGCAGCGGATTGTGGCTGACTTTGTTCCTCGATATGCATCATACTGTCCAACTGCTCTTGAAGCTGCTGCTAAAGTTGTTATCAATATGCATAAATGGAGCTTGACAACAATAAATAGAGGAGAGGATTCTAATGGAGTTGCATTTGAGACTGCTAAAGCCTGTATCTTTGGTCTAGGTGATATCTGTTCTGCTGCTGCATCAGAGGCACCAACATCATCTGTTATCCGAGGCATATGTTCTGCAGTTTTTCTGAATGTGCTAACCTTCTTCTTATCCTCATTTGAGGGGAAGGATATTTTTCAGATTGTTGATAAGGAAACATTGAAGATACATGATTCCCCTGAGTTATTTCCCAGATTGAAGCAAAAGTTCTCAGATGAAGATGGATCTCCATTGTTAAAATTACCCAAGTTTAGTGCACTCAGTTTCCTTAAGATTTTCTTTTCTTGTTCCAAAAAATTGCTTGCCGCTTGTTTTGAGCTGTTCAACTCCACCACTACAGAGGGAATCAACAAAGAAGGATATTTCTTTCTAAGTCAGGTGACAAGCAGGCTTGATGCTGATGATGCAACTCATACTTCGAATACAACAATTGATGGACCTAAATCATGTCCAGGTTCTGTTGAAACTAGCACTGAAGGCAATAAAGTTAGTGATGAGGGGTTTGTAAGAGATGGCAACCACGTTCTGGGGAAGGCATCTCCTATGTCAAATAGCTGCTTGCTGAGACTGGTTCTTGACAAAGATCCATCATTGAGAAGTTGGATGTTCGTGAAATATAAGAAATTATGTAAATCGGCATCTTCTCAAGTTGTATCAGAATTCACATCTGCTCTAGAAAGAATCTTTGAATCTTTTACAGAACTAGCGCAGGTAGAAGACAGTCAAGTGGATAGCGATGAGGATACTTCTGATCCATCCAAATATATTAATAGACACTCAGTGGGTCCCATGGAGGCCGACATCCGCTCAAGTACAAGTTCTAATCATGATAAAGGAGGCTCAAGGTCCATGGACTTTGAGACTGGTGAGCATGGAGATTTATCACATGGCAGGTCTTCCATGCCTAGGGACCTGCTGAACAACCATTTGCATTCTCCTGTCACAAGAAAATCTTTTGAGTTCAGGACTGATCCATTTGAAGGTAGAAGCCACCTTGTCCAAGCTGAGAAGAATCAAATGACAATATCATATTCTGCGACAAGTAGTCAAACTATTTGGTACTTTGATGGGGACCCTGCTGCCATGGATGTTTTCTCAGCTTCTAAACAGCTCTGGCTAGGTTCCATATCCCCTGATGCATCTGAAGCTCTTGTAAGGTTTCAGGTTGAGAGGTTTGGTCCTATAGAACATTTCTTTTTCTTTCCAATTAAAGGATTTGCCTTGGTTGAGTACAGAAACATTATGGATGCTATAAGGGCTCGGGAATATATGCAGGGGCATTCCCCTTGGCATATAAAGTTCTTGGATATAGGATTGGGAACCAGAGGAGCTATTAATGGTGTTGCAGTTGGTTCTAGTTACCATGTTTATGTTGGAAATGTTTCAAGCCAATGGGCAAAGGATGAGATATTGCATGAATCAATGAAAGTGATTTACAAGGGTCCTCACATGGTTACTGATCTTACTGGTGGGGAGGCATTATTGATGGAATTTGAAACACCTGAAGAAGCTGCCTCTGTAATGGCACACCTGAGGCAGTATCGCAGGGAAAATGGTAACCGCTTGATGCCTTTAAATTCTGTAACTAATGTTGCACGAACTCATTTGGATGGAGCAAGATCTATGAGTGGCCCTATTCCTCTTATGACCATGTGCAATCTTGCTATTGGCAATGTAGGGTCTGTTGTCAGGCTGGCACGAGCAAATATGCAGATGGGTTGTTGCTGGTTTATTGAATGCAGCAATGTAGATGCTGCAGTTACCGTCTTAAAGAACCTGCGGGGTTGTCCTGGGATGTTCTTCCAGATAGAGTTCAGTCAACCTGGGAAACCTCATGCTTTCACAAAGAAATCCGAGAGCAGCACTCTGGAGCTAGTATCCCCTAGAGTGAAACTGGAAAATCATGGGACTGCATTACAAAGCGGGCATGGATTTCAGTCTAACTGGGCTGTTTCTGGATCTACAGAGATGCCTGAAGTTGGAGTGAGAAAAACTGATGGCTATGACAGTAGTATGGTGGTGGGTCTTCCATCAGGAGGTCATGCTGGTTCTGGTGCTGCTGAACAAATGTGGATGTATAAGAAACCTGAAATTGAACTTCATTCTGGACAAGGAAATATTCCCTGCATGCCTATAGCAACACAGGGACCTAATATTGCACCACCACAAGCTCCTTTCTTACCTGCTTCTGTGACACCACTTGCACAGATGCAGGGAAACTCAATGCAGCATTTTGATCAAATGTTTTCCCTTCCTGTGTCTCTGCCACCTCTAGTTCCCCCTCCACCAAGTTCTCCCCCTCCACCCACACCCATTGTGTTGTCCAATTTGCAATACCAGTGGCAAGGTACATTATCTAAAAGTGGAGTTAACTACTGTACCATAATCGCGCATAGAGTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAAATCAACATTTACTGGCACCCCACCACATAAAAGGGAAGTATGCCAGCTGCGCCCTTTTTCTGCCAGTGACCATAAAGGCTTTCAGGATTTCATAGCATACTTGAAGCAGAGGGATTGCGCAGGAGTAATTAAGATTCCAGCTGTGAAATCAATGTGGGCAAGGCTACTCTTTATTCTTCCCTACTCGACAGATGCATGTTCTATGCTTTCTATTGCACCAAATCCTTCGGATTGCTTAATTGCTGTGGTTTTGCCAAAAGAGACCAGCTTTGAATCCACGTGA 3234 43.88 MSAEQPLKKRKLHDHVSEPPPEPQPPPQTAAQQRSATPPLSQEEIMRRRRNREEIRNVYECYKRIKSCIAHEDARLMPELEQAYLSLITASRGCTSAQRIVADFVPRYASYCPTALEAAAKVVINMHKWSLTTINRGEDSNGVAFETAKACIFGLGDICSAAASEAPTSSVIRGICSAVFLNVLTFFLSSFEGKDIFQIVDKETLKIHDSPELFPRLKQKFSDEDGSPLLKLPKFSALSFLKIFFSCSKKLLAACFELFNSTTTEGINKEGYFFLSQVTSRLDADDATHTSNTTIDGPKSCPGSVETSTEGNKVSDEGFVRDGNHVLGKASPMSNSCLLRLVLDKDPSLRSWMFVKYKKLCKSASSQVVSEFTSALERIFESFTELAQVEDSQVDSDEDTSDPSKYINRHSVGPMEADIRSSTSSNHDKGGSRSMDFETGEHGDLSHGRSSMPRDLLNNHLHSPVTRKSFEFRTDPFEGRSHLVQAEKNQMTISYSATSSQTIWYFDGDPAAMDVFSASKQLWLGSISPDASEALVRFQVERFGPIEHFFFFPIKGFALVEYRNIMDAIRAREYMQGHSPWHIKFLDIGLGTRGAINGVAVGSSYHVYVGNVSSQWAKDEILHESMKVIYKGPHMVTDLTGGEALLMEFETPEEAASVMAHLRQYRRENGNRLMPLNSVTNVARTHLDGARSMSGPIPLMTMCNLAIGNVGSVVRLARANMQMGCCWFIECSNVDAAVTVLKNLRGCPGMFFQIEFSQPGKPHAFTKKSESSTLELVSPRVKLENHGTALQSGHGFQSNWAVSGSTEMPEVGVRKTDGYDSSMVVGLPSGGHAGSGAAEQMWMYKKPEIELHSGQGNIPCMPIATQGPNIAPPQAPFLPASVTPLAQMQGNSMQHFDQMFSLPVSLPPLVPPPPSSPPPPTPIVLSNLQYQWQGTLSKSGVNYCTIIAHRVDSDICKYLSNMSEPTEWPAKLDMTKRTDFRHVKSTFTGTPPHKREVCQLRPFSASDHKGFQDFIAYLKQRDCAGVIKIPAVKSMWARLLFILPYSTDACSMLSIAPNPSDCLIAVVLPKETSFEST* 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7692728 7708608 - Vvi18g658 Vvi18g658 780361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g658 1077 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 522 578 IPR000504 GO:0003723
Vvi18g658 1077 SUPERFAMILY RNA-binding domain, RBD 509 579 IPR035979 GO:0003676
Vvi18g658 1077 MobiDBLite consensus disorder prediction 289 315 - -
Vvi18g658 1077 SMART rrm1_1 521 584 IPR000504 GO:0003723
Vvi18g658 1077 MobiDBLite consensus disorder prediction 289 314 - -
Vvi18g658 1077 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 755 1076 - -
Vvi18g658 1077 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 715 - -
Vvi18g658 1077 MobiDBLite consensus disorder prediction 388 455 - -
Vvi18g658 1077 MobiDBLite consensus disorder prediction 1 18 - -
Vvi18g658 1077 Pfam SPOC domain 926 1069 IPR012921 -
Vvi18g658 1077 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 614 IPR000504 GO:0003723
Vvi18g658 1077 MobiDBLite consensus disorder prediction 431 449 - -
Vvi18g658 1077 Gene3D - 511 592 IPR012677 -
Vvi18g658 1077 PANTHER NUCLEIC ACID BINDING PROTEIN 1 715 - -
Vvi18g658 1077 PANTHER NUCLEIC ACID BINDING PROTEIN 755 1076 - -
Vvi18g658 1077 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g658 K18667 ASCC2; activating signal cointegrator complex subunit 2 - vvi:100259158 1321.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59