Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g659 ATGCATTGGATTCTTTTTTCCTCTATTTTTTTTTCTTTTCACATCTACACTCTGTGGATTGTAGGAAGAGTATGCGGAAGTAAGAAGAATGTAAAATCAAGAAGGGGTCTGAAACCCACTCCAAATGGTAACAATGAAGAAGACACCAATGCTGTAAGTGAAGGACAGAGCTCCAGCAGTATCAGCTCAGAGGATGATTCTAATGCTTCTCAGGAGCTAAATGGGGGGACAACTTCGGAGTCTAAAGGCTCTGCAGCTCTCAACTCGAATGGAAAGACGAGAGCCAGTAGGGGGTCAGCCACAGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGCGATTGAGAATCTTACAGAACCTTGTTCCTAATGGAACAAAGGTTGACATAAGCACAATGCTTGAAGAGGCAGTCCATTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTATTGAGCTCAGATGACATGTGGATGTACGCTCCCATTGCTTACAACGGAATGGACATTGGTCTCCAGAACCTCCACCAGAAGATCCCTTCACTCCGGTGA 561 44.21 MHWILFSSIFFSFHIYTLWIVGRVCGSKKNVKSRRGLKPTPNGNNEEDTNAVSEGQSSSSISSEDDSNASQELNGGTTSESKGSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGMDIGLQNLHQKIPSLR* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7711467 7715556 - Vvi18g659 Vvi18g659 780362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g659 186 MobiDBLite consensus disorder prediction 37 103 - -
Vvi18g659 186 Gene3D - 100 164 IPR036638 GO:0046983
Vvi18g659 186 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 27 175 - -
Vvi18g659 186 SMART finulus 105 154 IPR011598 GO:0046983
Vvi18g659 186 MobiDBLite consensus disorder prediction 30 110 - -
Vvi18g659 186 Pfam Helix-loop-helix DNA-binding domain 109 149 IPR011598 GO:0046983
Vvi18g659 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 165 IPR036638 GO:0046983
Vvi18g659 186 CDD bHLH_AtIND_like 100 162 - -
Vvi18g659 186 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 175 - -
Vvi18g659 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 148 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g698 Vvi18g659 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14349 PF00010 HLH 6.30E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g659 - - vvi:100264335 306.605