Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g659 | ATGCATTGGATTCTTTTTTCCTCTATTTTTTTTTCTTTTCACATCTACACTCTGTGGATTGTAGGAAGAGTATGCGGAAGTAAGAAGAATGTAAAATCAAGAAGGGGTCTGAAACCCACTCCAAATGGTAACAATGAAGAAGACACCAATGCTGTAAGTGAAGGACAGAGCTCCAGCAGTATCAGCTCAGAGGATGATTCTAATGCTTCTCAGGAGCTAAATGGGGGGACAACTTCGGAGTCTAAAGGCTCTGCAGCTCTCAACTCGAATGGAAAGACGAGAGCCAGTAGGGGGTCAGCCACAGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGCGATTGAGAATCTTACAGAACCTTGTTCCTAATGGAACAAAGGTTGACATAAGCACAATGCTTGAAGAGGCAGTCCATTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTATTGAGCTCAGATGACATGTGGATGTACGCTCCCATTGCTTACAACGGAATGGACATTGGTCTCCAGAACCTCCACCAGAAGATCCCTTCACTCCGGTGA | 561 | 44.21 | MHWILFSSIFFSFHIYTLWIVGRVCGSKKNVKSRRGLKPTPNGNNEEDTNAVSEGQSSSSISSEDDSNASQELNGGTTSESKGSAALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGMDIGLQNLHQKIPSLR* | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7711467 | 7715556 | - | Vvi18g659 | Vvi18g659 | 780362 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g659 | 186 | MobiDBLite | consensus disorder prediction | 37 | 103 | - | - | |
Vvi18g659 | 186 | Gene3D | - | 100 | 164 | IPR036638 | GO:0046983 | |
Vvi18g659 | 186 | PANTHER | TRANSCRIPTION FACTOR BHLH139-LIKE | 27 | 175 | - | - | |
Vvi18g659 | 186 | SMART | finulus | 105 | 154 | IPR011598 | GO:0046983 | |
Vvi18g659 | 186 | MobiDBLite | consensus disorder prediction | 30 | 110 | - | - | |
Vvi18g659 | 186 | Pfam | Helix-loop-helix DNA-binding domain | 109 | 149 | IPR011598 | GO:0046983 | |
Vvi18g659 | 186 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 99 | 165 | IPR036638 | GO:0046983 | |
Vvi18g659 | 186 | CDD | bHLH_AtIND_like | 100 | 162 | - | - | |
Vvi18g659 | 186 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 27 | 175 | - | - | |
Vvi18g659 | 186 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 99 | 148 | IPR011598 | GO:0046983 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14349 | PF00010 | HLH | 6.30E-09 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g659 | - | - | vvi:100264335 | 306.605 |