Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g662 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGATGCAGCGACTCATGCATTCTGAGGACGTGCCTCCAATGGATCGAGAACCCTGAGGCTCAAGGCTACGCCACCTTGTTCGTCTCTAAGTTCTTCGGCCGCAGCGATCTCATGTCCTTCATTTCTGCGGTGCCCGAGAACAAGAGGCCTGCTCTGTTTCAGTCTCTTTTGTTCGAAGCCTGTGGGCGCACTGTGAATCCAGTGAACGGCGCCGTCGGTCTTCTCTGGACTGGTAATTGGCACGTGTGCCAGGCAGCGGTGGACACAGTTCTCGCCGGAGGCACCTTGCGGCCGATTCCCGGAATTCTGGCCGGACCGATCAAACCAGGTTTCGATGAAGCTTCTGCGACGTTCTGTACCGACGCGTGGAAGCTACGTGACGCATACTCGCTGTCGAAACCGTTCATGCGTGACAATGCCTCTGAGGAAGCCAAAAGAATTGAGACTCAACCGCCTCACCTCGGAATCTCCGCGACGGCGCGCTTCTCGAACAAGATCAACGCCGGGAGAGGGAAGAGGTCGGGTACATCGTTTTGTTCGGAAGGATCATCGGGAACGATGAGCTACGATGGAAGTGACGATGATCGTAACATGTCTGGATGCCAAGAGCGGAAGCTTCTCAACCTTTTTATCTGA 669 55.31 MSCNGCRVLRKGCSDSCILRTCLQWIENPEAQGYATLFVSKFFGRSDLMSFISAVPENKRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLAGGTLRPIPGILAGPIKPGFDEASATFCTDAWKLRDAYSLSKPFMRDNASEEAKRIETQPPHLGISATARFSNKINAGRGKRSGTSFCSEGSSGTMSYDGSDDDRNMSGCQERKLLNLFI* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7746213 7747271 + Vvi18g662 Vvi18g662 780365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g662 222 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vvi18g662 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 222 - -
Vvi18g662 222 MobiDBLite consensus disorder prediction 180 207 - -
Vvi18g662 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 222 - -
Vvi18g662 222 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vvi18g662 222 MobiDBLite consensus disorder prediction 180 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g692 Vvi18g662 ECH
Vvi7g948 Vvi18g662 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14350 PF03195 LOB 9.80E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g662 - - vvi:100255841 460.685