Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g667 ATGGATCCATCCATCATGAAGCTCCTCGAAGAAGACGAGGATGAAACAATGCATTCTGGTGCTGATGTGGAGGCACTCACTGCTGCCTTAAACAGAGACATAGAAGGAGATACCTCAACTTCTCAGCCTTCAGATTCTGAAAATGTTTTATCTCAAGGAAGCAATCATACTTCCAGTCAGTTGTTTTCACAGTGGCAAACATCCAGCCAAGATGAAAACACGGACTCTCAAAGTCAACAAGAGCTAAAGAGTTTGCAGCAGCAAGAGCTAAACTCATCTGACTTGGAGCAAAAGCAGCATGGATCTGGTGTTGAGAATCAGCAACAAGTTGATGCCTCACATGACATAAATCGCCTCCCTTTGCAACAGAAACAATCCCAAGATGATCCTCAACAGCTGCAGTCAGAACCAAATCCCATACAGTTTTCTCAAGCACCTGGGATACAGATTTCAGAAAAGAATTCTGTCCAGATTCCAGAACCAGACAGAATTCATAATCCAGATAAACAGCATCAATTCCCAGAATTACAGAAGATAAATAATCAACAGGGAATAGCCACTGAGCAGGCAAGTAACTCGGGGAATCAAAATAAACATATACCATTTGGAATGTTGCTTCCATCTATAATACCCCACCTGGATAAAGACAGAGCCTTGCAACTTCGAACTCTTTATGCTAAACTGAAGAAAAATGAAATCCCCAAACTAGCATTCGTCAGGCTTATGAGAGGTATCGTAGGAGACCAGATGCTCAAGTTGGCAGTAATGAAACTGCAACAATCACCGACCGGACCCAGCCAATTCCAATTACAGTCTCAAGCTTCAGCGCTGCAACAACATTTGAAAACACCATCCAGTATTGGCTCACAGTTCTCTGATCCTCATTCATTTTCACAACTTCATCAGAAGGGCCAGAGCACTCCTGCAGACTCATCTCATATGCCCTCTTCAGCCATGAAAGTGCAGACTGATTCAAGCTATCCAACCACTGAAACCAATTCTCAAAAACCCCGGGAGATGGAACGTCAGTCAGATTCACATGGAATGCAAGGGAGCCAAATGTCTTCTTCCAGCTTGAGTTCTGCCAAACAAGAAAGGGAGCACTCTACACCTTTTACTATGTATGGGAGTGCTGGTGGTAATTATCACTCATATACAGGCACTAATGTTAATACTTCAGCAACATCTACAAAACAGCAACCTCATGATTCCCAAATGAGGCAAGTGCCTCTTCACCAAAACATTGGTTCAACTCAGATGGGAGGGACAAGTCAAGCCATGAATCCAATGAGTGTGCCCAAATTTGAGAGGCAGAGTTCTGTTAATGATCCCAAGAGAGTGCAGGGTGGATCTCTTCCTCATCCATCAAACAGTTCGACATTGCAACAGAGTTCTCAGCAGCAAAAATCCCAGCTGTCTACCCCACAGAATGAATCTTTGGAGAAGCAGGCTTCTAGAATTGGTTTCTCATCATCTATGAGTATGTTGCCTCCAAATTCAGTTTCATCTTCCATGGGGACACATCTGGACCCAAATGTCACGCTAGGCTCCCGAATCCCATCTGTTACTTCTCCTGTTGGAATTAATACAAGGACACCCCCAAAAAAACCTTCTATTGGCCAGAAGAAACCACTTGAAGCACTTGGTTCTTCACCGCCTCTGCCAAGTAAAAAGCAAAAAGTATCTGGAGCCTTTCTGGATCAAAGCATTGAACAACTGAATGATGTTACTGCTGTCAGTGGAGTTAACCTGAGGGAAGAAGAAGAGCAGTTATTTTCCGGGCCCAAGGAGGACAGTCGAGTCTCAGAAGCATCTCGAAGGGTTGTGCAAGAAGAAGAAGAAAGGCTAATTTTGCAGAAAGCTCCTCTTCAAAAAAAATTAGCAGAAATCATGGCTAGATGCAGTTTAAAGAATATAAGCAATGATGTGGAGCGATGCTTATCATTGTGTGTTGAAGAAAGATTGCGTGGATTTATAAGTAATTTAATCAGACTGTCAAAACAGCGAGCTGATGTTGAGAAACCAAGACATCGGAGTATTATTACCTCAGATATTCGACAACAAATCTTGATAATGAACCATAAGGCCAGGGAGGAATGGGAGAAAAAGCAGGCTGAAGCAGAAAAGCTTCGTAAACTCAATGAGCCTGAGGGTAGTACTGGGGTTGATGGTGACAAGGACAAGGATGAAGGTCGTGTAAAATCACTCAAGGCAAACAAAGAGGAGGATGACAAAATGAGGACAACAGCTGCAAATGTTGCTGCTCGAGCTGCTGTTGGAGGAGATGACATGTTGTCCAAATGGCAACTTATGGCTGAGCAAGCTCGCCAGAAACGTGAAGGAGGAATTGATGCAGCCTCTGGTTCTCAACCTGGTAAAGATGCAAGCCGCAAGCTGTCTTCAACCTCTGGAAGAAATGCAAGGGAAAATCAAGAAGCAGAAAAAAGGGGCTACTCAACTGTTGTTTCTTCACCTGGTGGTGTTAGAAAATTTGGAAGGAACAATGCCATAGTGCCCCAAACTAGGGTAGCTCGTAATATCACTGTTAAGGATGTCATTTCAGTATTGGAAAGGGAACCACAAATGTTGAAATCTACTCTGATATATCGCTTGTACGAAAAAATGCGCTCTGGTGCTGCAACTGAATAA 2649 43.34 MDPSIMKLLEEDEDETMHSGADVEALTAALNRDIEGDTSTSQPSDSENVLSQGSNHTSSQLFSQWQTSSQDENTDSQSQQELKSLQQQELNSSDLEQKQHGSGVENQQQVDASHDINRLPLQQKQSQDDPQQLQSEPNPIQFSQAPGIQISEKNSVQIPEPDRIHNPDKQHQFPELQKINNQQGIATEQASNSGNQNKHIPFGMLLPSIIPHLDKDRALQLRTLYAKLKKNEIPKLAFVRLMRGIVGDQMLKLAVMKLQQSPTGPSQFQLQSQASALQQHLKTPSSIGSQFSDPHSFSQLHQKGQSTPADSSHMPSSAMKVQTDSSYPTTETNSQKPREMERQSDSHGMQGSQMSSSSLSSAKQEREHSTPFTMYGSAGGNYHSYTGTNVNTSATSTKQQPHDSQMRQVPLHQNIGSTQMGGTSQAMNPMSVPKFERQSSVNDPKRVQGGSLPHPSNSSTLQQSSQQQKSQLSTPQNESLEKQASRIGFSSSMSMLPPNSVSSSMGTHLDPNVTLGSRIPSVTSPVGINTRTPPKKPSIGQKKPLEALGSSPPLPSKKQKVSGAFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQEEEERLILQKAPLQKKLAEIMARCSLKNISNDVERCLSLCVEERLRGFISNLIRLSKQRADVEKPRHRSIITSDIRQQILIMNHKAREEWEKKQAEAEKLRKLNEPEGSTGVDGDKDKDEGRVKSLKANKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGIDAASGSQPGKDASRKLSSTSGRNARENQEAEKRGYSTVVSSPGGVRKFGRNNAIVPQTRVARNITVKDVISVLEREPQMLKSTLIYRLYEKMRSGAATE* 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7798156 7812824 + Vvi18g667 Vvi18g667 780370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g667 882 Pfam RCD1-SRO-TAF4 (RST) plant domain 196 260 IPR022003 -
Vvi18g667 882 MobiDBLite consensus disorder prediction 793 807 - -
Vvi18g667 882 PANTHER IP01149P-RELATED 39 876 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 122 142 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 263 334 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 33 109 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 1 109 - -
Vvi18g667 882 Gene3D Histone, subunit A 618 663 IPR009072 GO:0046982
Vvi18g667 882 CDD TAF4 568 870 IPR007900 GO:0005669|GO:0006352
Vvi18g667 882 MobiDBLite consensus disorder prediction 346 536 - -
Vvi18g667 882 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 39 876 IPR045144 GO:0005669|GO:0006352
Vvi18g667 882 MobiDBLite consensus disorder prediction 263 559 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 710 748 - -
Vvi18g667 882 MobiDBLite consensus disorder prediction 773 826 - -
Vvi18g667 882 Coils Coil 693 715 - -
Vvi18g667 882 Pfam Transcription initiation factor TFIID component TAF4 family 573 871 IPR007900 GO:0005669|GO:0006352
Vvi18g667 882 ProSiteProfiles RST domain profile. 193 264 IPR022003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g667 K03129 TAF4; transcription initiation factor TFIID subunit 4 - vvi:100252311 1564.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43