Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g671 ATGGAGCTTGCTCAGGAGCTCTTGTTCACAGTTTCTCTTGCTCTCCTCTTCTCTTTTCTTGTGGCCAAACTCGTCTCCCTGGCCATGGCTGCTGACTTGAAGAGCGCCCAGAATGTGGATGATCACATCGTTGCCAATGAGGTTAGGTTTGTAGAAACCGAGACTAGGGTGGAATCTGTTGATGGAGGATCGGGTCTGGTTGAGGAAACTTGTGAAATTACGCGTGGCGGTGAAGTGCCGGTTTTGCCTTCGGAGGAGGAAGTGTCGGAGATTGTTGAATTGCCGGAAAATTCACCGAGGGAAAGGTCGGGGCATGAGATTTTAGTGAGTCATGATGTTGCTGTCGTTGAGGAACGTGACGAGAGGGAGTTGGAGAGTGAGGAAGATGATTGGGAGGGGGTTGAGAGGAGTGAATTGGAGAGGGTTTTTGCGGCGGCTGCCAACTTTGTTGGTTCTGGGAACAAGGGTGACGGGTGGTCAAGTGATGCGCAGATGGAATTGTATGGACTTCATAAGATCGCAGTTGAGGGGCCTTGCCATGAGCCTCAGCCTATGCCGCTCAAGCTCTCTGCCCGTGCCAAGTGGAATGCTTGGCAAAGGATGGGAAACATGAGTAGGGAGGTGGCCATGGAGCAGTATATTGCTCTTCTTTCAGATAGAGTTCCTGGGTGGATGGAAGCTAGTTCTGCTGGAGATGACAAACCAGAGTCCTCAGAAGGCGGAGTACATGATATACTGGATCCTAATCAAAGCTCATTGCTGCATGATCAAATAAGTTCTACAAATGAAACGAAACCAGAACTGAAGTCTGGTACTTTGGGAATTGATTTGACTGAGGGTTCAAACTCTGTGAGCACGTGCGATGAGCAAAACAGCAGCTATCAGGAGGAATGTTGTGAATGA 903 49.39 MELAQELLFTVSLALLFSFLVAKLVSLAMAADLKSAQNVDDHIVANEVRFVETETRVESVDGGSGLVEETCEITRGGEVPVLPSEEEVSEIVELPENSPRERSGHEILVSHDVAVVEERDERELESEEDDWEGVERSELERVFAAAANFVGSGNKGDGWSSDAQMELYGLHKIAVEGPCHEPQPMPLKLSARAKWNAWQRMGNMSREVAMEQYIALLSDRVPGWMEASSAGDDKPESSEGGVHDILDPNQSSLLHDQISSTNETKPELKSGTLGIDLTEGSNSVSTCDEQNSSYQEECCE* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7839601 7843143 + Vvi18g671 Vvi18g671 780374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g671 300 MobiDBLite consensus disorder prediction 250 268 - -
Vvi18g671 300 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 139 226 IPR000582 GO:0000062
Vvi18g671 300 SUPERFAMILY Acyl-CoA binding protein 138 225 IPR035984 GO:0000062
Vvi18g671 300 Gene3D - 133 240 IPR014352 -
Vvi18g671 300 PRINTS Acyl-coA-binding protein signature 159 177 IPR000582 GO:0000062
Vvi18g671 300 PRINTS Acyl-coA-binding protein signature 182 197 IPR000582 GO:0000062
Vvi18g671 300 PRINTS Acyl-coA-binding protein signature 203 220 IPR000582 GO:0000062
Vvi18g671 300 MobiDBLite consensus disorder prediction 275 300 - -
Vvi18g671 300 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 51 268 - -
Vvi18g671 300 MobiDBLite consensus disorder prediction 226 300 - -
Vvi18g671 300 Pfam Acyl CoA binding protein 140 217 IPR000582 GO:0000062
Vvi18g671 300 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 3 51 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g671 - - - vvi:100248941 498.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g958 Vvi18g671 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g671 . . . . . Bpe04g00162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009050 1 1 1 1 1 1 2 0 0 1 0 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 2 3 2 33