Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g672 ATGGAGTTGAAGCTCCTACTCCTACAAAACACAAAAATGTGTTGTGAACCTCCAAGAATTAGAGAAAATATTTCATTATATATAAAGAATGTTACGGAGGAGAAATTGATACATCTATTGGCAATCAGCAGTGAAGATAGAAAACAAACCAGCTTAGCTAGTAGCCAAGAAAGCCAATCATTCTGGTATGTGAGGTTCTTATTCATTCCCTACAGCTTTAAAACAGAAATATCACCCAAAGAGGCCCATTCAATTCCCTTCTCTTCATCCCCAGTTTGCAGAGACACACGGAATATGAAGACATGGAGGTTATCAATAGTTGTACTCGTGAGTTTCCATTTCGCACTTGTTGTAGCAGAAGAGATCAAGCACCAACAAAAGAACACTTACATCGTTCACATGGACAAGTCTAACATGCCAACAACTTTCGATGATCACTTCCAATGGTACGACTCTTCTCTAAAGACGGCATCAAGCTCGGCTGATATGCTTTACACCTACAACAATGTAGTCCACGGTTTCTCCACCAGGTTGACGACGGAGGAAGCTGACGAGGTGATTGTGGGAGTATTAGACACGGGTGTCTGGCCTGAGCTAAAAAGCTTTGACGACACTGGGCTGGGTCCCGTCCCAAGTAGCTGGAAAGGCGAATGTGAGACAGGCAAGACCTTCCCGTTATCAAGCTGCAATCGAAAACTAATTGGGGCAAGGTTTTTCTCAAGAGGGTATGAAGTCGCATTTGGACCAGTTAACGAAACAATAGAGTCAAGATCACCAAGGGATGATGACGGCCATGGAAGTCACACCTCAACTACTGCAGTTGGATCAGCAGTTGAAGGAGCTAGCCTCTTCGGTTTCGCTGCTGGCACAGCCCGTGGAATGGCAACACATGCCAGAGTTGCTGCATACAAGGTTTGCTGGCTTGGTGGATGTTATGGCTCTGACATTACAGTGTTGCCATTGGGGCTTTCAGGGCTATGGAACAAGGAATCCTCGTATCTTGCTCAGCTGGAAATGGTTGACACCAGGAAGGTGAGCTTCAACATCATTTCAGGTACATCCATGTCCTGCCCCCATGTAAGTGGGCTAGCAGCACTACTCAAGGCTGCTCACCCAGAATGGAGACCTGCAGCAATTAAGTCTGCCCTCATGACCACAGCTTACCACACATACAAGGGTGGTGAAACAATACAGGATGTTGCAACTGGAAGGCCAGCAACTCCATTTGATTATGGTGCTGGACATGTAAATCCAGTATCAGCTCTGGACCCCGGCCTTGTCTATGATGCTACTGTTGATGACTATCTAAGTTTCTTTTGTGCCTTAAACTACAAGCAAGATGAGATCAAGCGGTTCACAAACAGAGACTTCACCTGTGATATGAACAAGAAATACAGTGTGGAAGATCTTAATTACCCATCCTTTGCAGTTCCTCTGCAGACGGCCTCAGGCAAAGGAGGTGGTAGTGAAAGTGTCAAATTTCTAATTTAA 1491 45.2 MELKLLLLQNTKMCCEPPRIRENISLYIKNVTEEKLIHLLAISSEDRKQTSLASSQESQSFWYVRFLFIPYSFKTEISPKEAHSIPFSSSPVCRDTRNMKTWRLSIVVLVSFHFALVVAEEIKHQQKNTYIVHMDKSNMPTTFDDHFQWYDSSLKTASSSADMLYTYNNVVHGFSTRLTTEEADEVIVGVLDTGVWPELKSFDDTGLGPVPSSWKGECETGKTFPLSSCNRKLIGARFFSRGYEVAFGPVNETIESRSPRDDDGHGSHTSTTAVGSAVEGASLFGFAAGTARGMATHARVAAYKVCWLGGCYGSDITVLPLGLSGLWNKESSYLAQLEMVDTRKVSFNIISGTSMSCPHVSGLAALLKAAHPEWRPAAIKSALMTTAYHTYKGGETIQDVATGRPATPFDYGAGHVNPVSALDPGLVYDATVDDYLSFFCALNYKQDEIKRFTNRDFTCDMNKKYSVEDLNYPSFAVPLQTASGKGGGSESVKFLI* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7846236 7853155 + Vvi18g672 Vvi18g672 780375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g672 496 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 115 187 IPR037045 -
Vvi18g672 496 PRINTS Subtilisin serine protease family (S8) signature 183 202 IPR015500 -
Vvi18g672 496 PRINTS Subtilisin serine protease family (S8) signature 351 367 IPR015500 -
Vvi18g672 496 Pfam Peptidase inhibitor I9 129 186 IPR010259 -
Vvi18g672 496 Gene3D Peptidase S8/S53 domain 188 316 IPR036852 GO:0004252|GO:0006508
Vvi18g672 496 Gene3D Peptidase S8/S53 domain 341 435 IPR036852 GO:0004252|GO:0006508
Vvi18g672 496 CDD Peptidases_S8_3 186 388 IPR034197 -
Vvi18g672 496 Gene3D - 439 494 - -
Vvi18g672 496 ProSitePatterns Serine proteases, subtilase family, serine active site. 352 362 IPR023828 -
Vvi18g672 496 SUPERFAMILY Subtilisin-like 180 428 IPR036852 GO:0004252|GO:0006508
Vvi18g672 496 Pfam Subtilase family 185 315 IPR000209 GO:0006508|GO:0008236
Vvi18g672 496 Pfam Subtilase family 341 414 IPR000209 GO:0006508|GO:0008236
Vvi18g672 496 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 118 184 - -
Vvi18g672 496 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 340 488 - -
Vvi18g672 496 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 184 317 - -
Vvi18g672 496 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 184 317 IPR045051 -
Vvi18g672 496 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 340 488 IPR045051 -
Vvi18g672 496 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 118 184 IPR045051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g672 - - - rcu:8288514 333.183
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g963 Vvi18g672 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g672 . . . . . . . . Cmo05g00151 Cmo12g00526 . . . . . . Cpe07g00510 Bhi04g00404 . . . . . Lcy13g2125 . . . . . . . . . . . . . . Cme03g02092 . . . . . Bpe05g00038 . Bma05g00049 . . . Cma12g00589 Cma05g00150 . . . . . . . . . . . . . . . . . . . Csa02g01905 Chy03g01581 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1