Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g682 ATGACGCAGACCTGGTCTCTACTAATTTCTGCCATCGTCATCTTATCTTTCGTCACAATCTATTCTTCTTCAGCCTCACAAATCCCCAATAGAGGCGTCCGTCGCCCCATGATTTTTCCGTTATATTTCGCGTCCCCTAAATCTTCGGGGCACCGGCAGGCCATTGAGGGAAGCTATTGGCGGCGGCATCTGAAATCGGACCCTTACCACCACCCCAATGCTCGCATGAGGCTCTACGACGATCTCCTCTCCAACGGTTACTATACGACCCGGCTTTGGATTGGAACGCCTCCGCAGGAATTCGCTCTCATTGTGGATACGGGGAGTACTGTCACCTATGTTCCCTGCTCTGACTGTGAACACTGTGGAAAGCATCAGGATCCAAGATTTCAACCAGATGAGTCTAGTACTTATCATCCTGTTAAATGCAATATGGATTGTAACTGTGACCATGATGGAGTAAATTGTGTTTATGAGAGACGGTATGCTGAGATGAGCTCTAGCAGTGGTGTGCTTGGGGAGGACATCATTTCTTTTGGCAACCAAAGTGAAGTTGTCCCACAAAGGGCTGTTTTTGGTTGTGAAAATGTGGAAACCGGTGATCTTTACAGCCAACGAGCAGATGGCATAATGGGTCTAGGCCGTGGTCAGCTCAGCATTGTAGATCAACTTGTTGACAAGAATGTCATTAATGATTCATTTTCATTATGTTATGGTGGGATGCATGTAGGTGGAGGGGCTATGGTTCTTGGTGGGATTCCACCTCCCCCTGATATGGTCTTCTCCCGTTCAGATCCTTACCGCAGTCCATATTACAATATTGAGCTCAAGGAAATACATGTTGCTGGGAAGCCATTGAAATTAAGCCCAAGTACCTTTGATAGAAAGCATGGAACAGTCCTGGATAGTGGAACTACATATGCTTACCTTCCAGAAGAAGCTTTTGTTGCATTCAGGGATGCAATTATAAAAAAAAGTCATAACCTCAAGCAAATCCATGGTCCTGACCCGAATTATAATGATATTTGCTTTTCTGGTGCTGGAAGGGATGTCTCCCAACTCTCAAAAGCATTTCCAGAGGTTGACATGGTATTTAGCAATGGGCAGAAGTTGTCACTGACTCCAGAAAACTACTTGTTCCAGCATACAAAAGTTCATGGTGCATACTGCCTGGGAATTTTCCGGAATGGGGATTCAACTACTCTTTTAGGAGGAATCATTGTTCGTAATACCCTTGTAACTTATGATCGGGAGAATGAAAAGATTGGATTTTGGAAAACTAATTGCTCAGAACTATGGAAGAGACTGCATATTCCTGGTGCTCCTGCAGCAGCCCCTATTGTTCCCACTCCTAAATCTGTTTCTGCACCAGCACCTGTTGTTTCTTATAACAATAATACAACTGTTGGAATGCCTCCTACAGTGGCTCCAAGCGGATTGCCTCAGGAAGTTCTTCCAGGAGAATTCCAAGTTGGACTTATAACGTTTGATATGTCGTTTAGTGTCAACTACTCCAATATGAAGCCTAACTTCACAGAACTTGCTGAGTTTATCGCCCATGAGTTGGAAATTAATGCTTCACAGGTTCATTTCTTGAACTTCTTTTCAAAAGGAAATCATTCTGTCATTAGATGGGCTATATTTCCGGCAGAATCTGCCACTTACATTTCCAACTCGACTGCGATGAGCATAATTTTGCAGTTAAAGGAACATCGTGTGCATCTTCCTGAGAGGTTTGGAAGTTATCAGTTGGTTGAATGGAAAGTTGAGCCACAAATTAAGCGGACATGGTGGGAGCAACACTTCTGGACTGTTGTGGTGGGAGTCATTATCACATTGATTCTTGGTTTATCCACTTTTGGAGTATGGTTTGTTTGGAAATGGAGACAGAATGCCGTTGGTACATACAAGCCCATTGGTGCCAGAGTTCCTGAGCAGGAGCTGCAGCAACTTACTTTGATCTCAAGCTCACAAGCCTAA 1980 44.14 MTQTWSLLISAIVILSFVTIYSSSASQIPNRGVRRPMIFPLYFASPKSSGHRQAIEGSYWRRHLKSDPYHHPNARMRLYDDLLSNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSDCEHCGKHQDPRFQPDESSTYHPVKCNMDCNCDHDGVNCVYERRYAEMSSSSGVLGEDIISFGNQSEVVPQRAVFGCENVETGDLYSQRADGIMGLGRGQLSIVDQLVDKNVINDSFSLCYGGMHVGGGAMVLGGIPPPPDMVFSRSDPYRSPYYNIELKEIHVAGKPLKLSPSTFDRKHGTVLDSGTTYAYLPEEAFVAFRDAIIKKSHNLKQIHGPDPNYNDICFSGAGRDVSQLSKAFPEVDMVFSNGQKLSLTPENYLFQHTKVHGAYCLGIFRNGDSTTLLGGIIVRNTLVTYDRENEKIGFWKTNCSELWKRLHIPGAPAAAPIVPTPKSVSAPAPVVSYNNNTTVGMPPTVAPSGLPQEVLPGEFQVGLITFDMSFSVNYSNMKPNFTELAEFIAHELEINASQVHFLNFFSKGNHSVIRWAIFPAESATYISNSTAMSIILQLKEHRVHLPERFGSYQLVEWKVEPQIKRTWWEQHFWTVVVGVIITLILGLSTFGVWFVWKWRQNAVGTYKPIGARVPEQELQQLTLISSSQA* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7918069 7925298 - Vvi18g682 Vvi18g682 780385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g682 659 Pfam Xylanase inhibitor C-terminal 272 424 IPR032799 -
Vvi18g682 659 CDD pepsin_A_like_plant 87 429 IPR034161 -
Vvi18g682 659 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 476 - -
Vvi18g682 659 PANTHER ASPARTYL PROTEASES 10 476 IPR001461 GO:0004190|GO:0006508
Vvi18g682 659 Gene3D Acid Proteases 260 434 IPR021109 -
Vvi18g682 659 SUPERFAMILY Acid proteases 83 434 IPR021109 -
Vvi18g682 659 Gene3D Acid Proteases 73 251 IPR021109 -
Vvi18g682 659 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Vvi18g682 659 PRINTS Pepsin (A1) aspartic protease family signature 299 310 IPR001461 GO:0004190|GO:0006508
Vvi18g682 659 PRINTS Pepsin (A1) aspartic protease family signature 401 416 IPR001461 GO:0004190|GO:0006508
Vvi18g682 659 Pfam Xylanase inhibitor N-terminal 88 252 IPR032861 -
Vvi18g682 659 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 103 114 IPR001969 GO:0004190|GO:0006508
Vvi18g682 659 ProSiteProfiles Peptidase family A1 domain profile. 88 425 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g682 - - - vvi:100245410 1344.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g973 Vvi18g682 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64