Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g684 ATGAGCATTGCGTTCCTAGATCCCGGAAACCTTGAAGGGGATCTTCAGGCGGGAGCCATTGCAGGGGAAGAGTATCCGACATGGGCTGGGCGGTTGTTGTGGTTCATGGCGGAGTTGGCCTTGATCGGGGCTGATATCCAGGAGGTGATTGGTAGTGCCATTGCAATTAAGATTCTTAGCCGTGGATTTCTTCCGCTTTGGGCTGGAGTTGTAATTACTGCGTCCGATTGTTTTATCTTTTTGTTTCTTGAAAACTATGGAGTGAGGAAGTTGGAAGCTGTTTTTGCAGTTTTCATTGCAACAATGGGACTTTCATTTGCCTGGATGTTTGGTGATGCAAAGCCCAGTGGAAGGGAACTTCTGATAGGTGTTTTGGTTCCAAAACTTAGCTCAAAAACAATTCGGCAGGCAGTGGGAGTTGTTGGTTGTGTTATAATGCCTCATAATGTATTTTTGCATTCTGCTTTGGTACAGTCCAGGAAGATTGACCCCCACAGAAAAGGTCGGGTTCAAGAGGCACTCAACTACTATTCAATTGAGTCGACAGTTGCCCTTCTAATCTCTTTCATGATCAATTTGTTTGTGACAACTGTTTTTGCAAAGGGATTTTATGGTACTAAACAGGCCGATGGAATAGGCCTAGTAAATGCAGGGCAGTATCTTGAAGAGAAGTATGGGGGAGGTGTTTTCCCAATACTTTATGTCTGGGGTATTGGACTATTGGCAGCTGGACAGAGTAGTACCATAACTGGCACATATGCTGGGCAATTTATCATGGGAGGCTTTCTCAATCTCCGTCTGAAGAAATGGCTAAGGGCATTGATAACACGTAGTTTTGCTATTGTGCCTACTATGATTGTAGCTCTTGTTTTCAACAGATCTGAAGCTTCACTGGATGTTTTAAATGAATGGCTTAATGTACTTCAGTCAATGCAGATTCCTTTTGCACTTATTCCCCTTCTTACTTTAGTGTCCAAGGAACAGGTTATGGGTGTCTTCAAGGTTGGACCACTTTTAGAGAGAGTGGCGTGGACTGTGGCTGCCCTTGTAATAGTGATCAATGGGTATCTTCTGCTGGATTTCTTCATGGCTGAAGTTGATGGAGTGCTATTTGGTTTTCTGGTCTGTGCTGGCACAGCTCTATATGTAGCATTTATTTTTTATCTTGTATCACATGGTGGTGTCCTTTCTTCTACTTGGTTCAGCTTAGTAACATCCAAGAGGTTTCCTTTCATTGGGAGTTGA 1245 43.53 MSIAFLDPGNLEGDLQAGAIAGEEYPTWAGRLLWFMAELALIGADIQEVIGSAIAIKILSRGFLPLWAGVVITASDCFIFLFLENYGVRKLEAVFAVFIATMGLSFAWMFGDAKPSGRELLIGVLVPKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPHRKGRVQEALNYYSIESTVALLISFMINLFVTTVFAKGFYGTKQADGIGLVNAGQYLEEKYGGGVFPILYVWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTMIVALVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQVMGVFKVGPLLERVAWTVAALVIVINGYLLLDFFMAEVDGVLFGFLVCAGTALYVAFIFYLVSHGGVLSSTWFSLVTSKRFPFIGS* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7935644 7940529 - Vvi18g684 Vvi18g684 780387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g684 414 Pfam Natural resistance-associated macrophage protein 19 336 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PANTHER BNAC08G04640D PROTEIN 1 22 - -
Vvi18g684 414 PANTHER BNAC08G04640D PROTEIN 23 402 - -
Vvi18g684 414 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 22 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 33 59 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 63 82 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 88 109 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 137 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 244 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 272 289 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 PRINTS Natural resistance-associated macrophage protein signature 306 325 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g684 414 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 21 330 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g975 Vvi18g684 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g684 K21398 - vvi:100262579 794.267