Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g688 ATGTACAGACCAGTGTTGGCACCTCCCAGTCGTCATCAGGGGTGGCAAGAGTCCACCGCTCGCTTGCTTGCTCCTTTAACTCTATGGCTATGTGTCACGGTCAGCATTCGATATGGGTATTACGGGAACTGCCGAATGGTGCTTGGACCAAGCTCCTCCCGCTTGATGAAGGCAAGTTCCCTTTTTGTAAAGCAGATTGAAGTGAAGGACGATGATAAAAAGGGGGTTCTTCTTTACGGGTTTGCGGAGAAGCCAGAATTGAGTGTCGAAACAAATTGGAGCGTCTCCAATTATCTCATCGTTGGATCCTATGGCCGAAAGGGATTCTCCTTGTGGTTGAATAAAGGTTCGAGTATCCGTGTCAGATGGGAAGCTCAACCTAGTAGTTTGAGTGATCTGCAAGTGTTTCTAATTAAAGGGGAACGAAAATACGAAACTTTGCTGCCGAATCCAACAAATTCCCCTGCTGCCTTTCCCTTCCATGAATCAACAAATGGGAGAGAAGCCGAATACACAATCCTGGAAGACAATAGATACTATGTAGGCATCATAAACGCCAATCGTAAAAGCGTCATAATGACATTGAATGTTAATGTTACATCCAAGATGTACGATATCACTAAGGCAAAGAGCATGTGTTCAACAATAAAGGGATCCTGTCGTCTCAATCTTCTCTTCCCCAATACTCAATTTGTCATACTAACCACACCCAACAATGGAGATCTTGCTGGATGGTACATTGAGCTTTCTTTTGTGGCTCGTGTGGTAACCTACGTTTCGATTTTAGGATTTGTCGTAATTATTATATTTCTGGTATTGAAATACCTTGGAGCCTGCGAGGGAGACAACGAAGTACATGTAGAGGAGATAACGCCTCGGGAAGTAACTGAAACTCACCCCTTAATGCCAGAGAAGCTATTTCGGCTCACCTATGGAACAGGTGAAGAAGATGCAGAATCAGGAATGTCTAGCAGCTCCTCAGAGGATTTGTATGATGGGAAGATTTGCACTATTTGCTACGATGAGCCACGGAACTGCTTCTTTGTTCCCTGTGGTCATTGTGCCACCTGCTATGACTGTGCTAAAAGGATTATAGAAGGGGAGAACAAGGTTTGTCCAATATGTCGAAGGTTCATTCACAAAGTAAGAAAATTGTTCACTCCTTAG 1167 44.04 MYRPVLAPPSRHQGWQESTARLLAPLTLWLCVTVSIRYGYYGNCRMVLGPSSSRLMKASSLFVKQIEVKDDDKKGVLLYGFAEKPELSVETNWSVSNYLIVGSYGRKGFSLWLNKGSSIRVRWEAQPSSLSDLQVFLIKGERKYETLLPNPTNSPAAFPFHESTNGREAEYTILEDNRYYVGIINANRKSVIMTLNVNVTSKMYDITKAKSMCSTIKGSCRLNLLFPNTQFVILTTPNNGDLAGWYIELSFVARVVTYVSILGFVVIIIFLVLKYLGACEGDNEVHVEEITPREVTETHPLMPEKLFRLTYGTGEEDAESGMSSSSSEDLYDGKICTICYDEPRNCFFVPCGHCATCYDCAKRIIEGENKVCPICRRFIHKVRKLFTP* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7962291 7964509 - Vvi18g688 Vvi18g688 780391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g688 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Vvi18g688 388 Pfam Domain of unknown function (DUF4793) 169 272 IPR032010 -
Vvi18g688 388 Pfam Domain of unknown function (DUF4792) 77 143 IPR032008 -
Vvi18g688 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 382 - -
Vvi18g688 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 387 - -
Vvi18g688 388 SMART ring_2 336 375 IPR001841 -
Vvi18g688 388 PANTHER OS05G0521000 PROTEIN 13 387 IPR044586 GO:0004842
Vvi18g688 388 SUPERFAMILY RING/U-box 327 382 - -
Vvi18g688 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g688 - - - vvi:100248821 774.237
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g976 Vvi18g688 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12