Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g689 | ATGGGGAGGGTGAAGCTTCAAATCAAGAAAATTGAGAACACAACGAATAGGCAGGTCACCTTCTCAAAAAGGAGAAATGGGCTTATCAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGAGTCAGTCTCTTCTCTGGAAATAAGAGCATCGAAGAGATCATGACTCGGTATGTAAATCTTCCTGAACATGAACGAGGCCGGCTGCATAATCAAGAGTTCCTACAAAGGGCTCTTGGTAAGTTGAAAAGTGAAGCTAATCGAACCTATCAAGCTGCAGCCAGCCCGATGAGTACAGATTCCCAACTCGAGGAGATTCAACAAGAGATCCTCAAATATAAGTCCCAGTTGGATGATATGCAGAAACGACTAAGGATATTTGAAGGTGATCCTTCTGAGATCACCACAGTGAGAGAGGTTGAGTACCGGGAGCAGATCCTTGAGGAAACCTTGAAACAGGTTCGGTTTCAGAAGCAAGCTTTGGAGGAAAAGTATAATACTACAGAGCCGCAGCCAACTACCCAAGTGCATCTGCCTCCGGAGACTGCAAATGTAAATGGTTTTATCTCAGGAAATCCAAACAATATGTTGGATTGGCTCCCACCAAGAGACCCACAAGTGCAGATCCTGAATTTTTTGGATTCCAACGGTCTCCTCCCAATGAGAGAGCAACCACAGCGCATGGTTGAAATCTTACCGCCATCTTCAACCCTCCTTCCAGGACAAAACATTCATCTTGAGGATCACATGAGCCCGAGCAGCGGGATGGAGGAAGATAATAATGTGCAGCGTCCTCAGTTTGGCCCAGCTATCGATGTAAACCTTTCTCCGTGGGCTGAATTTTATCCGACAGCAGGGAATGGCTCCTATCCTGCAGCACAGCCCCGGGGACCGGCACTACTTGAACTGTTTCTGTCTCAGTTCACACCATGA | 969 | 46.34 | MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSIEEIMTRYVNLPEHERGRLHNQEFLQRALGKLKSEANRTYQAAASPMSTDSQLEEIQQEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQALEEKYNTTEPQPTTQVHLPPETANVNGFISGNPNNMLDWLPPRDPQVQILNFLDSNGLLPMREQPQRMVEILPPSSTLLPGQNIHLEDHMSPSSGMEEDNNVQRPQFGPAIDVNLSPWAEFYPTAGNGSYPAAQPRGPALLELFLSQFTP* | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7968541 | 7971242 | + | Vvi18g689 | Vvi18g689 | 780392 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g689 | 322 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Vvi18g689 | 322 | Gene3D | - | 13 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | Coils | Coil | 156 | 176 | - | - | |
Vvi18g689 | 322 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | SUPERFAMILY | SRF-like | 2 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 55 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Vvi18g689 | 322 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 | 1 | 303 | - | - | |
Vvi18g689 | 322 | Coils | Coil | 115 | 135 | - | - | |
Vvi18g689 | 322 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 303 | - | - | |
Vvi18g689 | 322 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14351 | PF00319 | SRF-TF | 7.80E-26 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g689 | - | - | vvi:100253913 | 645.966 |