Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g689 ATGGGGAGGGTGAAGCTTCAAATCAAGAAAATTGAGAACACAACGAATAGGCAGGTCACCTTCTCAAAAAGGAGAAATGGGCTTATCAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGAGTCAGTCTCTTCTCTGGAAATAAGAGCATCGAAGAGATCATGACTCGGTATGTAAATCTTCCTGAACATGAACGAGGCCGGCTGCATAATCAAGAGTTCCTACAAAGGGCTCTTGGTAAGTTGAAAAGTGAAGCTAATCGAACCTATCAAGCTGCAGCCAGCCCGATGAGTACAGATTCCCAACTCGAGGAGATTCAACAAGAGATCCTCAAATATAAGTCCCAGTTGGATGATATGCAGAAACGACTAAGGATATTTGAAGGTGATCCTTCTGAGATCACCACAGTGAGAGAGGTTGAGTACCGGGAGCAGATCCTTGAGGAAACCTTGAAACAGGTTCGGTTTCAGAAGCAAGCTTTGGAGGAAAAGTATAATACTACAGAGCCGCAGCCAACTACCCAAGTGCATCTGCCTCCGGAGACTGCAAATGTAAATGGTTTTATCTCAGGAAATCCAAACAATATGTTGGATTGGCTCCCACCAAGAGACCCACAAGTGCAGATCCTGAATTTTTTGGATTCCAACGGTCTCCTCCCAATGAGAGAGCAACCACAGCGCATGGTTGAAATCTTACCGCCATCTTCAACCCTCCTTCCAGGACAAAACATTCATCTTGAGGATCACATGAGCCCGAGCAGCGGGATGGAGGAAGATAATAATGTGCAGCGTCCTCAGTTTGGCCCAGCTATCGATGTAAACCTTTCTCCGTGGGCTGAATTTTATCCGACAGCAGGGAATGGCTCCTATCCTGCAGCACAGCCCCGGGGACCGGCACTACTTGAACTGTTTCTGTCTCAGTTCACACCATGA 969 46.34 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSIEEIMTRYVNLPEHERGRLHNQEFLQRALGKLKSEANRTYQAAASPMSTDSQLEEIQQEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQALEEKYNTTEPQPTTQVHLPPETANVNGFISGNPNNMLDWLPPRDPQVQILNFLDSNGLLPMREQPQRMVEILPPSSTLLPGQNIHLEDHMSPSSGMEEDNNVQRPQFGPAIDVNLSPWAEFYPTAGNGSYPAAQPRGPALLELFLSQFTP* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7968541 7971242 + Vvi18g689 Vvi18g689 780392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g689 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vvi18g689 322 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vvi18g689 322 Coils Coil 156 176 - -
Vvi18g689 322 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Vvi18g689 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g689 322 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 303 - -
Vvi18g689 322 Coils Coil 115 135 - -
Vvi18g689 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 303 - -
Vvi18g689 322 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14351 PF00319 SRF-TF 7.80E-26 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g689 - - vvi:100253913 645.966