Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g69 ATGAAACGTTCTTTGATCTTTCTTCTGTGGTTCATCTCCATATCGGGCGTTCTCGCAATCTCAACGAAGCCGGAGACCTCCCTCTTGAATCTCGACAGCAAGGGTTTCGATATCTTGAAGGCCAATTCCATAGTGCCACAAGCGCCTAAAAATGATATAGCGCTAGTGGCTGCTTTAGATGGGACAATTTATCTCGTGGAGGCTAGTTCGAGGAAAATACTGTGGTCGTTCGCGTCTGGTTCATCTATCTATTCTTCGTATCAGGCTTTTCTTGATGGTGATAACGACAAGCAGCTGAGTACTGACTTCTTTATAGATTGTGGAGATGATTGGGAACTGTACAGGCATAACATTAGCTTCGGAAAAAGGGAAAAACTTCTATTGACTCCTGAAAAATATGTTGAAGGTGCGCCTTATGTATCAAAGGATGGAGTCACAGTGGGATCAAAGAAAACCACAGTATTTCTTGTTGACGCCAAATCTGGAACAATTATTAACACTTTTAGATCAGATGCTTCTCCTTTGATAGGAGGGTTTCAAAGTGATGAAGAAAACCCTATTCTATCTAGGGAAGAGATTGAAGAATTGATAGAGCCTGGTGATGTGGATTTGCAGAAAGTTGAGCTGCCACTTTACATCATGAGGACAGATTATGTACTGCAGCATTTCTCTCCAACTTCTGGCAAGGTGTTGTGGAATGTAAAGTTTGCTGATATTGAGGCTGTTTTTCAGTGTCCAGGGACTGAGATTGGTTCAGAATATATGAGTGATATTGAGTCTCCATTGCATTGTCAGACAAGGGCTTCTCCTGTTGGCAGGTTACCTGGACCTCATCACCTTGGCCAAGGCAAACCACTGCTTGCATTGCCCCTTTCTGAGGGGACTTTGAGTGTTCATGGTGGTGATGCTAGTGAAATGGATATCATGAGTATTGTTTCTGACAATATTGAGAAACTTGGAATATGGGCTGCCCCACTACTGTTCATTGTTGGCTTCATCATTTACCAATTTTTTGCAGTTCGAGAACCTGGCAAATCAAGGCCCAAGGATTCTAAAGTACAAGGTATCAGTCCCAAAAAGAAGAAAGCTCGGAAATCAGTAATCAATAAGAACAATGCCAGTAATGAGAAAAGGCATGGAAATATCTCACATGAGAGTAAGGTTGCAGACAATAATGGACTTTCACAAGTCGAGAGAAATGAAATAAAATTGGAGTTGAACTCTAATAGTCTTGCTGATGTTCATGTAGGCGAACGCAAGATTGGTAAGATGCTTGTATCTAAGAAAGAAATTGCTAAGGGAAGCAACGGTACCATTGTACTTGAGGGAATTTATGATGGCCGTCCAGTAGCTGTTAAACGCCTTGTGCGGACACATCATGATGTGGCTTTGAAAGAAATTCAGAATCTTATTGCATCAGATCAGCATCCAAATATTGTTCGATGGCATGGAGTGGAGTATGATCAAGATTTTGTTTATCTCTCTCTGGAACGCTGCAATTGTAGCTTAAGTGATTTGATTTATTTATGCTCCGATTCTCAAGATCAACTAGATTTTGAATTATGGAAGACTAATGGATATCCCTCTCCTCAGTTGTTAAAATTGATGAGGGATGTGGTCTCTGGGCTAGCCCATTTGCATGAACTTGGAATTATACATCGCGACCTAAAGCCTCAAAATATTTTGATAATCATCAAGGGGAAATCCTTATCTGCAAAACTTTCAGATATGGGTATCAGCAAGCGTCTTCTTGGGGATATGTCTTCCTTAACTCACCATGGTACTGGTTATGGGAGTTCAGGTTGGCAAGCACCTGAACAACTTCGCCATGGACGCCAAACACGTGCAGTGGATTTATTTAGCTTGGGCTGTGTTCTTTTTTTTTGTCTTACGGGGGGTAAACACCCATATGGTGACAATCTTGAACGTGATGTGAATATTGTGAATAACAGGAAAGACCTATTCTTAATAGAGAATATTCCTGAAGCTGTGGATCTTTTCTCTCTTCTCCTAGAGCCTGACCCAGATTTAAGGCCAAAGGCCATGGACGTGTTGCATCATCCTTTCTTTTGGAGTTCTGAAATGCGACTTTCATTTCTTCGAGATGTCAGTGATCGTGTGGAATTGGAAGACAGGGAGAATGAATCCCAACTCCTAAAACAATTAGAAAGCATTGGAACATTGGCTTTGAATGGGAAATGGGATGAAAAGATGGAAGGTGCATTCATCAATAACATTGGCCGCTACAGGCGCTACAAATTTGATAGTGTCCGTGATTTACTGAGAGTCATACGAAACAAGTTAAATCACTACAGGGAGCTTCCTTCAGATATCCAGGAAATTTTGGGCCCGGTTCCTGAAGGATTCAATTTATATTTCTCGAGTCGATTTCCAAGATTCTTAATCGAGGTTTATAAGGTGATACACACACACTGTAGGGAGGAAGAATTCTTTCAAAAGTATATTCAAAGAAATCTTATCTAA 2484 40.98 MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAPKNDIALVAALDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNISFGKREKLLLTPEKYVEGAPYVSKDGVTVGSKKTTVFLVDAKSGTIINTFRSDASPLIGGFQSDEENPILSREEIEELIEPGDVDLQKVELPLYIMRTDYVLQHFSPTSGKVLWNVKFADIEAVFQCPGTEIGSEYMSDIESPLHCQTRASPVGRLPGPHHLGQGKPLLALPLSEGTLSVHGGDASEMDIMSIVSDNIEKLGIWAAPLLFIVGFIIYQFFAVREPGKSRPKDSKVQGISPKKKKARKSVINKNNASNEKRHGNISHESKVADNNGLSQVERNEIKLELNSNSLADVHVGERKIGKMLVSKKEIAKGSNGTIVLEGIYDGRPVAVKRLVRTHHDVALKEIQNLIASDQHPNIVRWHGVEYDQDFVYLSLERCNCSLSDLIYLCSDSQDQLDFELWKTNGYPSPQLLKLMRDVVSGLAHLHELGIIHRDLKPQNILIIIKGKSLSAKLSDMGISKRLLGDMSSLTHHGTGYGSSGWQAPEQLRHGRQTRAVDLFSLGCVLFFCLTGGKHPYGDNLERDVNIVNNRKDLFLIENIPEAVDLFSLLLEPDPDLRPKAMDVLHHPFFWSSEMRLSFLRDVSDRVELEDRENESQLLKQLESIGTLALNGKWDEKMEGAFINNIGRYRRYKFDSVRDLLRVIRNKLNHYRELPSDIQEILGPVPEGFNLYFSSRFPRFLIEVYKVIHTHCREEEFFQKYIQRNLI* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 686114 690591 + Vvi18g69 Vvi18g69 779772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g69 827 Pfam Protein kinase domain 427 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g69 827 ProSiteProfiles Protein kinase domain profile. 425 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g69 827 Gene3D Transferase(Phosphotransferase) domain 1 499 692 - -
Vvi18g69 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Vvi18g69 827 CDD RNase_Ire1 694 821 - -
Vvi18g69 827 Gene3D Phosphorylase Kinase; domain 1 410 497 - -
Vvi18g69 827 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 45 823 - -
Vvi18g69 827 Gene3D KEN domain 693 826 IPR038357 -
Vvi18g69 827 Gene3D - 39 248 IPR015943 GO:0005515
Vvi18g69 827 CDD Luminal_IRE1_like 53 381 - -
Vvi18g69 827 ProSiteProfiles KEN domain profile. 693 824 IPR010513 GO:0004540|GO:0006397
Vvi18g69 827 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 236 IPR011047 -
Vvi18g69 827 SMART serkin_6 425 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g69 827 SMART PGNneu 755 809 - -
Vvi18g69 827 MobiDBLite consensus disorder prediction 344 391 - -
Vvi18g69 827 SMART ire1_9 138 169 IPR018391 -
Vvi18g69 827 SMART ire1_9 47 78 IPR018391 -
Vvi18g69 827 PANTHER IRE1-RELATED 45 823 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vvi18g69 827 Pfam Ribonuclease 2-5A 696 821 IPR010513 GO:0004540|GO:0006397
Vvi18g69 827 SUPERFAMILY Protein kinase-like (PK-like) 428 700 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g69 K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-] - vvi:100247854 1533.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1213 Vvi18g69 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g69 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00740 . Bda01g01566 Bpe02g01760 . Bma01g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002039 1 4 2 2 2 2 3 2 2 3 1 2 2 2 2 2 2 3 2 4 2 1 2 3 1 1 1 2 1 3 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76380 PF00069 Pkinase 2.40E-39 CL0016 Vvi PK