Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g690 ATGGGTTTCATTTTAATTCTTCACTATGCTGTTTTTGCCGTTCTTCTGTCCTCCCTAAGCTCGTTTCGTATTGTGTGTTCAGCTTCCTTGAGCATTAACACCGACAAGGAGGCATTGCTTTCATTTAAATATCATTTGAGCAGCGAATCCTCGGAGACTCTTTCTTCATGGAATGTTAACAACTCCAGCCCATGTAACTGGACTGGTGTTTTATGCAATGAGTCCAGGGATAGGGTCATTGGCCTTGATCTCTCAGGCTTTGGGCTAACAGGCACCATAAGCCCGCATATTGGGAATCTCTCCTTCCTTAGCTCTCTTGAGTTACAGGATAACCAATTGACAGGAACCATTCCTGATCAGGTTGGTGACCTTTCCCGCTTGAGCGTCTTGAACATGAGCTCTAACCACATCAGAGGTGCGATACCACTCAACATAACTATGTGTTTAGAGCTCGAGATCCTTGACTTGAAGGAAAATGAAATCTCGGGTACAATTCCTGCAGAGCTCGGCCGTCTCAGAAATTTGGAAATCCTCAAACTGGGTAGCAATCAGCTTGTTGGTGATATTCCGCCTTCTATCAGCAACCTTTCCTCACTGGACACGCTAAGTTTGGGCACCAACAATTTGGGTGGCAGGATTCCTGATGATTTGGGTCGCCTTCAGAATTTGAAAGAACTCGATCTAACCATTAATCAGCTGGAGGGCACTGTCCCTTCATCCATATACAACATCACTTCGCTGGTTAATTTGGCTGTGGCGTCCAACAACCTCTGGGGCGAAATTCCTAGTGATGTTGGAGATAGGCTTCCAAACCTTCTCATCTTCAATTTCTGCATCAATAAATTCACTGGTGGAATTCCTGGATCTTTGCACAATCTCACCAACATTAATGTCATTCGGATGGCACACAACCTTTTGGAAGGATCAGTGCCATCAGGTCTGGGGAATCTTCCGCAGCTGCGTATTTTACATATGGGTCAGAACAAGATCTACGGTAGTATACCACCCTCAATCAGTCATCTTAGCAGCTTGGCTTTGCTTAATTTGAGCCATAATCTTATTTCTGGTGAAATCCCACCAGAAATTGGTGAACTTGGGGAGATGCAGGAATTGTATTTGGCTTCCAATAATATCTCCGGCAGAATTCCAAGCTCCCTTGGCAATCTCCGACAATTGAGTCAGCTTGATTTATCTAGCAATAGATTGGTGGGAGGAATACCCACAAATTTTTCTAACTTCCAGAGATTGCTCTCAATGGATCTATCCAATAACAGGCTCAATGAAAGCATACCCAAGGAGATTCTCGGCCTTCCCGGTTTGAGCACTCTGCTGAATCTATCCAAGAACTCTCTGACTGGACCCTTGCCTCAAGAAGTTGAAGCACTCGAAAGTAGCTTAGAGGAATTGTTCATGGCAAACAACAAATTCTCAGGTTCTATTCCAGATACTCTGGGGGAAGTGAGGGGCTTGGAAATACTTGACCTCTCTACAAACCAACTCACTGGCTCAATACCCAGCATCGGTGTGTTAGCCTATCTAAAGAAAAGCAAAGCAAAGAAATTGCCGATCACGTCGGACTCATTTAAAGTGCTGCACCAAGTGGTCTCTTATGATGATCTACGCATGGCAACTGGGAATTTCAACCAGCAAAATCTGATCGGGAAAGGGAGCTTCGGGTCAGTTTACAAAGGGTATCTTACAGAAGGTACTGCAGTCGCAATCAAGGTGCTTGACATCCAAAGAAATGGATCATGGAAGAGTTTCTTCGCCGAGTGTGAGGCTTTGAGGACCGTAAGGCACCGGAATCTTGTGAAGCTGATCACCTCATGCTCCAGTTTGGACTTTAAGAATGTAGAATTTCTGGCTCTGATTTATGATTTCATGCACAATGGGAGCTTGGAAGACTGGATCAAGGGAACGAGAAGGCACGCAAGTGGATGTGCGCTGAATCTCGTAGAGAGATTGAAGATAGCCATTGACGTTGCTTGCGCCATGGATTACCTGCACCATGACTCTGAAACTCCCATCGCCCACTGTGATCTGAAGCCAAGCAACGTGCTGTTGGACAAAGACATGACCGCCAAGGTAGGGGACTTCGGGTTGGCCAGGTTACTGATGGACAGAGCGGCCGATCAACAGTCAATAGCCTCCACACACGGTCTCAGGGGTTCCATAGGCTACATACCTCCAGAGTACGGACTGGGAGGGAAACCAACAACATCCGGAGATGTGTACAGCTATGGAGTTATGTTGTTAGAGATGTTTACAGGGAAAAGCCCAACCCATGAGAGTTTCCTCGGGGGACTGACCTTAGCCCAGTGGGTTCAATCAGCTTTCCCAACAAACGTAAGGCAAGTGGTGGACCCTGAGCTGCTGCTTCCCACCGGAGCTCTTCAACATGAAGGACACCCAATAAGCGAGGAAGTGCAGCACGAATGTCTGATTGCTGTCATTGGGGTTGCGCTATCTTGCACCGTGGACTCTTCAGATAGACGCATCAGCTCCAGAGATGCTCTCTCCCAACTCAAAACTGCTGCCAAGGCCCTTCTCAAACCTACCCTCGATGATATGGAGGAAGGAGCTTCACCCCATTGTGTTGTTGATGTTTAG 2610 46.67 MGFILILHYAVFAVLLSSLSSFRIVCSASLSINTDKEALLSFKYHLSSESSETLSSWNVNNSSPCNWTGVLCNESRDRVIGLDLSGFGLTGTISPHIGNLSFLSSLELQDNQLTGTIPDQVGDLSRLSVLNMSSNHIRGAIPLNITMCLELEILDLKENEISGTIPAELGRLRNLEILKLGSNQLVGDIPPSISNLSSLDTLSLGTNNLGGRIPDDLGRLQNLKELDLTINQLEGTVPSSIYNITSLVNLAVASNNLWGEIPSDVGDRLPNLLIFNFCINKFTGGIPGSLHNLTNINVIRMAHNLLEGSVPSGLGNLPQLRILHMGQNKIYGSIPPSISHLSSLALLNLSHNLISGEIPPEIGELGEMQELYLASNNISGRIPSSLGNLRQLSQLDLSSNRLVGGIPTNFSNFQRLLSMDLSNNRLNESIPKEILGLPGLSTLLNLSKNSLTGPLPQEVEALESSLEELFMANNKFSGSIPDTLGEVRGLEILDLSTNQLTGSIPSIGVLAYLKKSKAKKLPITSDSFKVLHQVVSYDDLRMATGNFNQQNLIGKGSFGSVYKGYLTEGTAVAIKVLDIQRNGSWKSFFAECEALRTVRHRNLVKLITSCSSLDFKNVEFLALIYDFMHNGSLEDWIKGTRRHASGCALNLVERLKIAIDVACAMDYLHHDSETPIAHCDLKPSNVLLDKDMTAKVGDFGLARLLMDRAADQQSIASTHGLRGSIGYIPPEYGLGGKPTTSGDVYSYGVMLLEMFTGKSPTHESFLGGLTLAQWVQSAFPTNVRQVVDPELLLPTGALQHEGHPISEEVQHECLIAVIGVALSCTVDSSDRRISSRDALSQLKTAAKALLKPTLDDMEEGASPHCVVDV* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7977193 7980354 + Vvi18g690 Vvi18g690 780393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g690 869 SUPERFAMILY L domain-like 43 363 - -
Vvi18g690 869 SUPERFAMILY Protein kinase-like (PK-like) 528 842 IPR011009 -
Vvi18g690 869 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g690 869 SMART serkin_6 547 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g690 869 SMART LRR_typ_2 196 220 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 413 437 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 100 124 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 389 412 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 317 340 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 172 195 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 487 510 IPR003591 -
Vvi18g690 869 SMART LRR_typ_2 341 365 IPR003591 -
Vvi18g690 869 Gene3D Transferase(Phosphotransferase) domain 1 628 858 - -
Vvi18g690 869 ProSitePatterns Protein kinases ATP-binding region signature. 553 575 IPR017441 GO:0005524
Vvi18g690 869 Gene3D Ribonuclease Inhibitor 183 269 IPR032675 -
Vvi18g690 869 Gene3D Ribonuclease Inhibitor 31 182 IPR032675 -
Vvi18g690 869 SMART LRR_sd22_2 220 246 - -
Vvi18g690 869 SMART LRR_sd22_2 172 198 - -
Vvi18g690 869 SMART LRR_sd22_2 389 415 - -
Vvi18g690 869 SMART LRR_sd22_2 317 343 - -
Vvi18g690 869 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 507 845 - -
Vvi18g690 869 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 464 506 - -
Vvi18g690 869 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 319 463 - -
Vvi18g690 869 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 21 322 - -
Vvi18g690 869 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Vvi18g690 869 SUPERFAMILY L domain-like 312 514 - -
Vvi18g690 869 CDD STKc_IRAK 553 843 - -
Vvi18g690 869 Pfam Protein kinase domain 548 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g690 869 PANTHER OS04G0122200 PROTEIN 507 845 - -
Vvi18g690 869 PANTHER OS04G0122200 PROTEIN 464 506 - -
Vvi18g690 869 PANTHER OS04G0122200 PROTEIN 319 463 - -
Vvi18g690 869 PANTHER OS04G0122200 PROTEIN 21 322 - -
Vvi18g690 869 Gene3D Ribonuclease Inhibitor 270 520 IPR032675 -
Vvi18g690 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Vvi18g690 869 ProSiteProfiles Leucine-rich repeat profile. 489 511 IPR001611 GO:0005515
Vvi18g690 869 Gene3D Phosphorylase Kinase; domain 1 528 627 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76381 PF00069 Pkinase 1.10E-39 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g690 - - vvi:100259050 878.626