Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g692 ATGGGAACAGAGCAAATCCCAGAAGTGTTACTGAACTCTGGCCAAAAGATGCCATTAATTGGCATGGGAACAAGTGCCGTGCCCCAGCCACCGCATCATCATCTCACCTCCATTCTTGTTGATGCCATTAAGGTAGGCTACCGCCATTTTGACACTGCTGCCTCCTATGGCTCAGAAGAATCTCTTGGCCAAGCTGTTGCAGAATCTATAGAGAGAGGCCTCATCAAGAGTCGTGATGAAGTGTTCATCACTTCAAAGCTATGGTGCAACTGCAACCACCATGACCTGGTTCTCCCAGCCCTCAACAACACACTCCAGAAGCTGGGAATGGAGTATGTGGATCTTTATCTGGTGCATTTTCCTTTGAGGTTGAAGAAAGAAGCTGCAAGCTTTGAGTTTGCAAAGGAGGATATCTTCCCCAGCTGGGACATGAAAGGGACATGGGAAGCCATGGAAGAGTGCTGCAGATTGGGCCTAGCCAAGTCTATTGGCGTAAGCAACTTCAGTAGCAAAAAGCTCTCTCAGCTTCTCCAATATGCTACCATCCCTCCTGCTGTTAATCAGGTGGAAATGAACGCAGTATGGCAACAGGTGAAACTGAGAGAGTTTTGCAGAGAGAAGGGGATTCATGTGAGTGCATGGTCTCCATTGGGAGCAAATGGAGCCATGTGGGGCTCACTTGCAGTGGTTGAGAATCCACTTCTCAAAGAAATCTCTGCTGCAAAAGGGAAGAGCTTGGCACAGGTTGCATTGAGATGGTTGCACCAACAAGGGGTGAGTATTTTAGTTAAGAGCTTCAATAAGGAGAGAATGAAGGAAAATCTTCAAATCTTTGACTGGGAACTCAGTGATGATGAGCTCGCAAAGATTGAGCAGATCCCACAGCGCAGGGGTTTTTCTGGGCAAATGTTTGTTCATCATGATGGAATTTATAAATCCTCGGAGGAGCTTTGGGATGATGATGCATGA 969 46.96 MGTEQIPEVLLNSGQKMPLIGMGTSAVPQPPHHHLTSILVDAIKVGYRHFDTAASYGSEESLGQAVAESIERGLIKSRDEVFITSKLWCNCNHHDLVLPALNNTLQKLGMEYVDLYLVHFPLRLKKEAASFEFAKEDIFPSWDMKGTWEAMEECCRLGLAKSIGVSNFSSKKLSQLLQYATIPPAVNQVEMNAVWQQVKLREFCREKGIHVSAWSPLGANGAMWGSLAVVENPLLKEISAAKGKSLAQVALRWLHQQGVSILVKSFNKERMKENLQIFDWELSDDELAKIEQIPQRRGFSGQMFVHHDGIYKSSEELWDDDA* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7983437 7986889 - Vvi18g692 Vvi18g692 780395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g692 322 ProSitePatterns Aldo/keto reductase family putative active site signature. 262 277 IPR018170 GO:0016491
Vvi18g692 322 CDD AKR_AKR4A_4B 13 295 IPR044497 GO:0016616
Vvi18g692 322 ProSitePatterns Aldo/keto reductase family signature 2. 151 168 IPR018170 GO:0016491
Vvi18g692 322 ProSitePatterns Aldo/keto reductase family signature 1. 46 63 IPR018170 GO:0016491
Vvi18g692 322 PRINTS Aldo-keto reductase signature 42 66 IPR020471 GO:0016491
Vvi18g692 322 PRINTS Aldo-keto reductase signature 103 121 IPR020471 GO:0016491
Vvi18g692 322 PRINTS Aldo-keto reductase signature 151 168 IPR020471 GO:0016491
Vvi18g692 322 PRINTS Aldo-keto reductase signature 185 214 IPR020471 GO:0016491
Vvi18g692 322 PRINTS Aldo-keto reductase signature 229 253 IPR020471 GO:0016491
Vvi18g692 322 Gene3D - 8 322 IPR036812 -
Vvi18g692 322 PIRSF AKR 3 316 IPR020471 GO:0016491
Vvi18g692 322 PANTHER ALDO/KETO REDUCTASE FAMILY OXIDOREDUCTASE 7 320 - -
Vvi18g692 322 PANTHER ALDO/KETO REDUCTASE 7 320 - -
Vvi18g692 322 SUPERFAMILY NAD(P)-linked oxidoreductase 9 306 IPR036812 -
Vvi18g692 322 Pfam Aldo/keto reductase family 20 293 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g692 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] - vvi:100245420 655.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003177 1 1 1 1 1 2 1 1 2 1 2 2 1 2 2 1 2 1 1 2 2 2 1 1 1 3 1 3 2 6 50