Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g695 ATGACATATGTTTGTAAAGTTGGCGAAAATAGGCCAGTCAAAACTTTCTCAGGGCACCAGGATGAAGTTAATGCTGTCAAATGGGATCCAACAGTTTCCTTTTTGGCTTCTTGCTCCGATGATTACACTGCAAAGGTGATCGATAATTTTTCCTTAACTCCTTTCTATATGAAGCAGGATGATCATTTGCATGATTTGAAGGAACATACCAAGGAGATATATACAATCAGGTGGAGTCCTACTGGTGCTGGTACAAACAACCCTAATCATCAGTTGGTGTTAGCAAGTGCCTCCTTTGATTCCACAATAAAGCTATGGGATGTGGAATTAGGGTGCCTTCTCTACAGCTTGAATGGCCACAGCTTAGAATACAACAGCAGTCACCATAATTTAAAAACTTACACTGGAAATGGTGGGATTTTTGAAGTTTGTTGGAACAAGGAAGGTGACAGGATTGCTGCTTGTTTTTCTAACAACATAGTTTGTGTCTTGGTTTCCGTATGTAGCCGATTCTACTTCCCGATCCTTGTATATTATGATCATCATCATGGAAGGACTTCATTTGTAGAATTTGATTATTTTCTGGAACTCATATGTTTAGGTTGGAAAGCAGTTGTTGTTTGTGCTTGGAATCCAACATGTTCTCTCCTTGCATCCGGGTCTCATGATTCTACTGCTAGGATTTGGACTATTGTTGATGGAGCTTGTAACTCTACTCTACAAGATGTTCTTGTGTTGACACATGCAGGAGCCATGACTGTTGAGGATAATGGCTTTGCTGCAATCTGTGAGCTTGATTGGAAAGGGGATGGGACTCTGCTGGCAACGGGTTCTTGTACTGGGGAAACAAGAATATGGACTCCAAATGGAGCATTGGTGGCTTCTTTTGAGGAAGATATGGGACACATTGTTTCTCTACAATGGAACCAGATGGGTAATAGTCTTTTAAGCTGTGGTTCAGATAAAGTCGTTGTGTGGGACATAAACACTGTTGGATCACGACAAGAATTTAGCTTTCATTCTGCTCGAATTCTTGATGCTGATTGGCGAAACAATATTTCATTCGCAACATGCTCTGCTGACAGGAAGATACATGTTTGTGAAGTCGGCCTGAACCGCCCTTATAAAACTTTCTTGGGGCATCGGGCAGAAATTAATGGTATCCGGTGGAGTCCAACAGGCACTTTATTGGCTTCGTGCTCTGATGATACCTCCATAAAGATATGGAGTATGAATCACAATTCGTTTGTGCGCGATTTGAGGAGTCACAAGAGGGAGGTATACTGTATTGAATGGAGTCCTACTGGGCCTACGACAGATAACCCGAATCTGACACTACTACTGGCTAGTTCATCTTTTGATAACACCATAAATGTATGGGATGTGGAGCGAGGGAACCCTATATATGGCCTGACTCGCCACAGGAATATCATATATACAATTGAATTTAGCCCCAATGGGGAGTACTTGGCAAGTGGCTCTTTAGACAACTGGCTCTATGTCTGGTCGGTGAAAGAGGGAAGGCTTATCAAATCGTACTATGGAGGTGGTGGAGTTACAGACATCAGTTGGAACAAGAGTAGTGACAAAATTGCTGTTTCTTTTGTCAACAAATTAGTTTGTGTTTTGGATCTTAAAATGTAA 1644 41.67 MTYVCKVGENRPVKTFSGHQDEVNAVKWDPTVSFLASCSDDYTAKVIDNFSLTPFYMKQDDHLHDLKEHTKEIYTIRWSPTGAGTNNPNHQLVLASASFDSTIKLWDVELGCLLYSLNGHSLEYNSSHHNLKTYTGNGGIFEVCWNKEGDRIAACFSNNIVCVLVSVCSRFYFPILVYYDHHHGRTSFVEFDYFLELICLGWKAVVVCAWNPTCSLLASGSHDSTARIWTIVDGACNSTLQDVLVLTHAGAMTVEDNGFAAICELDWKGDGTLLATGSCTGETRIWTPNGALVASFEEDMGHIVSLQWNQMGNSLLSCGSDKVVVWDINTVGSRQEFSFHSARILDADWRNNISFATCSADRKIHVCEVGLNRPYKTFLGHRAEINGIRWSPTGTLLASCSDDTSIKIWSMNHNSFVRDLRSHKREVYCIEWSPTGPTTDNPNLTLLLASSSFDNTINVWDVERGNPIYGLTRHRNIIYTIEFSPNGEYLASGSLDNWLYVWSVKEGRLIKSYYGGGGVTDISWNKSSDKIAVSFVNKLVCVLDLKM* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8002638 8020766 - Vvi18g695 Vvi18g695 780398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 466 - -
Vvi18g695 547 PRINTS G protein beta WD-40 repeat signature 94 108 IPR020472 -
Vvi18g695 547 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Vvi18g695 547 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 48 - -
Vvi18g695 547 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 205 547 - -
Vvi18g695 547 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 131 164 - -
Vvi18g695 547 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 1 121 - -
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 116 IPR001680 GO:0005515
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 419 IPR001680 GO:0005515
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 508 - -
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 412 - -
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 239 IPR001680 GO:0005515
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 470 IPR001680 GO:0005515
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 512 IPR001680 GO:0005515
Vvi18g695 547 Gene3D - 202 547 IPR015943 GO:0005515
Vvi18g695 547 Gene3D - 1 166 IPR015943 GO:0005515
Vvi18g695 547 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 109 - -
Vvi18g695 547 PANTHER WD40 REPEAT PROTEIN 205 547 IPR045183 GO:0003714|GO:0016575
Vvi18g695 547 PANTHER WD40 REPEAT PROTEIN 1 121 IPR045183 GO:0003714|GO:0016575
Vvi18g695 547 PANTHER WD40 REPEAT PROTEIN 131 164 IPR045183 GO:0003714|GO:0016575
Vvi18g695 547 SUPERFAMILY WD40 repeat-like 192 545 IPR036322 GO:0005515
Vvi18g695 547 SMART WD40_4 371 410 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 330 368 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 192 230 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 9 48 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 127 165 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 239 287 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 289 327 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 413 461 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 59 107 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 464 503 IPR001680 GO:0005515
Vvi18g695 547 SMART WD40_4 506 544 IPR001680 GO:0005515
Vvi18g695 547 CDD WD40 203 503 - -
Vvi18g695 547 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
Vvi18g695 547 Pfam WD domain, G-beta repeat 208 229 IPR001680 GO:0005515
Vvi18g695 547 Pfam WD domain, G-beta repeat 374 410 IPR001680 GO:0005515
Vvi18g695 547 Pfam WD domain, G-beta repeat 11 47 IPR001680 GO:0005515
Vvi18g695 547 Pfam WD domain, G-beta repeat 417 461 IPR001680 GO:0005515
Vvi18g695 547 Pfam WD domain, G-beta repeat 466 503 IPR001680 GO:0005515
Vvi18g695 547 Pfam WD domain, G-beta repeat 62 107 IPR001680 GO:0005515
Vvi18g695 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 48 IPR001680 GO:0005515
Vvi18g695 547 SUPERFAMILY WD40 repeat-like 9 235 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g695 K04508 TBL1; transducin (beta)-like 1 - vvi:104882527 704.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g981 Vvi18g695 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g695 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068981 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1