Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g696 ATGGTCTCCATCACTTCCCTTGAATTCAAATTCTTGGTTTTCCGTTATGTCCGGGAGTCAGGTTTTACACATTCAGCTTTTGCTCTTGGGTTAAACTCAAATCATAGTGATGTTGACATGGACAACAATTTCTCATTTCTACAACCTTTGGATCTTATCACAGAAGATAGAATGGAACTTGTGAAGGTAATCTCCACTGTGTTTCACTTGCTAGAAGTTTTTATCCTACTTCCAATTATAATGGCTGATATAAGATATGGGTTTTTGTGGGGCTCCTTTGACATGGGGGTGAGAAAACGTAGGACCTCCATGCAGATGAAAATTGGGCCTAGAAGCGTGCCATGGCTTAAAACAATGGAAATCTCCCCAAGTTCTACATGCTTGCCTTGTGAGATTCCTAGCTGTGATGTGAAAGTTTTGGAAGGCCTTACCTCTGAGGTTTTTGCTTGTGCATGGAGTCCAGCTGGCTCATTTCTTGCTTCAGGGTGTCATGATGTTCACGCAGTGTGGTTCATTACAAATGGACCTTGTAGTACAATGCAGAATGGACTGCTAAATATTGTGTTGAAGCATTTTAGAGGTAGAACAAATGAAAAAAACAAGGATGTGACAACCCTTGATTGGAATGGAGATGGAACAGTACTTGCAACAGGTTCTTATGATAATCAAGCAAGAATATGGAGCAGGGTTGGTATGTTGTTTTATACTTTGAACAAACATAAAGGGCCAGTCTTCTCTCTGAAGTGGAACAAGAAAGGTGATAATCTTCTAAGTGGCAGCATGGATAAAACCGCAATTGTGTGGGGTGTAAAAACAGGGGAATAG 825 40.73 MVSITSLEFKFLVFRYVRESGFTHSAFALGLNSNHSDVDMDNNFSFLQPLDLITEDRMELVKVISTVFHLLEVFILLPIIMADIRYGFLWGSFDMGVRKRRTSMQMKIGPRSVPWLKTMEISPSSTCLPCEIPSCDVKVLEGLTSEVFACAWSPAGSFLASGCHDVHAVWFITNGPCSTMQNGLLNIVLKHFRGRTNEKNKDVTTLDWNGDGTVLATGSYDNQARIWSRVGMLFYTLNKHKGPVFSLKWNKKGDNLLSGSMDKTAIVWGVKTGE* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8020848 8029561 - Vvi18g696 Vvi18g696 780399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g696 274 SMART WD40_4 185 228 IPR001680 GO:0005515
Vvi18g696 274 SMART WD40_4 133 171 IPR001680 GO:0005515
Vvi18g696 274 SMART WD40_4 230 269 IPR001680 GO:0005515
Vvi18g696 274 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 115 274 - -
Vvi18g696 274 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 33 66 - -
Vvi18g696 274 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 32 - -
Vvi18g696 274 Gene3D - 129 274 IPR015943 GO:0005515
Vvi18g696 274 PANTHER WD40 REPEAT PROTEIN 115 274 IPR045183 GO:0003714|GO:0016575
Vvi18g696 274 PANTHER WD40 REPEAT PROTEIN 33 66 IPR045183 GO:0003714|GO:0016575
Vvi18g696 274 PANTHER WD40 REPEAT PROTEIN 4 32 IPR045183 GO:0003714|GO:0016575
Vvi18g696 274 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 274 IPR001680 GO:0005515
Vvi18g696 274 SUPERFAMILY WD40 repeat-like 119 273 IPR036322 GO:0005515
Vvi18g696 274 Pfam WD domain, G-beta repeat 190 228 IPR001680 GO:0005515
Vvi18g696 274 Pfam WD domain, G-beta repeat 234 268 IPR001680 GO:0005515
Vvi18g696 274 Gene3D - 2 66 - -
Vvi18g696 274 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Vvi18g696 274 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 228 IPR001680 GO:0005515
Vvi18g696 274 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g696 K04508 TBL1; transducin (beta)-like 1 - zju:107420520 242.662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g696 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068982 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1