Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g697 ATGTTAGATGAGTTCCGACGAAACAATAGCGCAGTGGAGTGGCAAAAGAAGAGGACATTGATCGAAACCCTCTTGTTCCTCCAACAATCAGAGCCCGATTTCTACACGGATGACGTCATCAAAGGTCTGATGCTGGTAGTGATTTCTGCGGGAACGGATACATCATCAGTGACCCTGGAATGGGCAATGTCTCTTCTGCTGAATCATCCAGAGGCATTGGAGAAGGCGAGAGCGGAAATTGACAGCCATGTCAAACCGGGACACTTGCTAGATGACTCGGATCTTGCCAAGCTTCCATATCTCCGCAGTGTGGTCAATGAGACGCTTAGACTTTATCCCACGGCTCCTCTTCTGTTGCCTCATCTGTCATCTGAAGATTGCAAGATTCGAAGGAATGGAGAATGA 405 48.15 MLDEFRRNNSAVEWQKKRTLIETLLFLQQSEPDFYTDDVIKGLMLVVISAGTDTSSVTLEWAMSLLLNHPEALEKARAEIDSHVKPGHLLDDSDLAKLPYLRSVVNETLRLYPTAPLLLPHLSSEDCKIRRNGE* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8045603 8049549 + Vvi18g697 Vvi18g697 780400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g697 134 PRINTS P450 superfamily signature 50 67 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PRINTS P450 superfamily signature 103 114 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PANTHER CYTOCHROME P450 82C3-RELATED 1 129 - -
Vvi18g697 134 SUPERFAMILY Cytochrome P450 13 130 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 Pfam Cytochrome P450 11 130 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 Gene3D Cytochrome P450 1 133 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PRINTS E-class P450 group I signature 39 56 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PRINTS E-class P450 group I signature 59 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PRINTS E-class P450 group I signature 102 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g697 134 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY K, POLYPEPTIDE 1-RELATED 1 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g697 - - K13260 vvi:100255729 255.758
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g994 Vvi18g697 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g697 Blo01g01506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car09g00223 . . Bhi09g03264 . . . . . . Cla05g02084 . . . . . . . . Chy07g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024597 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2