Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g698 ATGTCAGCCAGTCTTTATCTTTATAGCTTTCCCCCAATTCTCCCCATGTGGATCTTAATAGGGGAATTGAAAACTAGAGTATTGAAAGTGGAAATCAAGTCGGCCTTTAATATATTAGCTTTTAATATCATAATGAAGATGCTTACAGGAAACAGGTATTTCGAAGATGATGACCTGAACTCAGATGAAACTAGGCATAGATTGGATGACATTAAGCAGACCTTCAGTCCCTCCAGGCAGGTGGGTCTGGGAGGCTTTCCATTCCTGAGGTGGTCAATAATCATAGATACTATGTTATCTCTGCAAGAATTGGAACCTGAATTCTACACTGACGATATCATCAAGGGAATGATAATGTATCACATCCTGATCCATTGTGTTATGAATGAAACACTAAGATTAGGTCCTGTGGGGCAATTCATACCTCCCCGGGACGCATCAGATGATTGTGTAATAGAGGTTTCGACATCCCACGAGGAACGATGTTGTTGGTGGATTCTTGGGCCTTGCACAAGGACCCCCAGCTGTGGGAAGATCCCACAATGTTCGAGCCAGAAAGATTTGAAGGGCCCCAATCTGAGAAGGGCGGGAGAAAAATACATGATCATGAAGGAAACCTGGTTCCGTTTCCTTTCTGTTTCCTCCTCTCTCTTTCTCATTGTCCTCTCAAAGCTGTTTTACCATAAGCAATCACGAGGAAGAAAGCTCCCACCCAGCCCGCCTTCATTTCCCATCATAGGACACCTCCATCTTTTGAAAGAACCAGTCCACCGATCCTTGCAACATCTTTCAGACCAGTATGGTCCAGTTCTTACCCTCCAATTTGGATTCCGAACTGTGCTTCTTCTATCATCCCCATCTGCGGTTGAAGAATGCTTCACTAAGCATGATCAGGTCTTTGCAAATAGGCCACGCCTTCTTGCTGGGAAGCACCTCCACTATGACTATACCACGCTGGGGGTAGCCCCTTATGGCCAGCACTGGCGCAATCTTCGCCGCCTTACCACACTTGAAATCTTCTCTACGAACCGCCTCAACATGTTTCTAGGTATTCGACAGGATGAAGTCAAATTCTTACTTAGAAATCTATTTCAGAGATCGGGCCAAGGTTTTGCAAGAGAGGCCAGCCGCTTTAGAGATATTATAAAGGAGATTTTGGAAACGTCCGGGGCATCAAATGCTGGGGATTTCTTGCCATTTTTACAATGGCAGGAACGAGGAAAGACTAAAACCTTCGTTGACTCTATGCTGGCTTTACAGAACTCAGAACCTGAATACTACGCCGATCACATTATCAAAGGCATGATATTGACATTGCTGACTGCGGGCACAGACACCTCCGCAGTGACGATGGAGTGGGCTATGTCACTTCTGCTCAACCATCCTACGGTGTTAGACAAAGTTAAAACGGAGTTGGACTGTAAAATTGGTCATCAACGTCTAGTTGAGGAACCAGACCTCTCCGACCTGCCCTACCTCCGAGCTATCGTGAACGAGACCCTTCGGTTGTTCCCTGCAGCACCACTCCTTGTTGCACATGAATCTTCAGATGACTGTAGCATTGGAGGGTATGATGTACGAGGTGGTACGATGTTGTTGGTGAATGCATGGGCCATTCACAGGGATGCTAAGGTATGGGAGGACCCCACAACATTGGTGCAGTGCTTTGAGTGGCAGAGGGTGGGCGAAGTGGAAGTGGACATGTCTGAAGGGAAAGGGCTCACTATGCCTAAGGCTCAACCATTAGAGGCTATGTGCAGAGCACGAAACTCCATGATTAAGGTCCTTTCAGAGCTGTGA 1800 46.44 MSASLYLYSFPPILPMWILIGELKTRVLKVEIKSAFNILAFNIIMKMLTGNRYFEDDDLNSDETRHRLDDIKQTFSPSRQVGLGGFPFLRWSIIIDTMLSLQELEPEFYTDDIIKGMIMYHILIHCVMNETLRLGPVGQFIPPRDASDDCVIEVSTSHEERCCWWILGPCTRTPSCGKIPQCSSQKDLKGPNLRRAGEKYMIMKETWFRFLSVSSSLFLIVLSKLFYHKQSRGRKLPPSPPSFPIIGHLHLLKEPVHRSLQHLSDQYGPVLTLQFGFRTVLLLSSPSAVEECFTKHDQVFANRPRLLAGKHLHYDYTTLGVAPYGQHWRNLRRLTTLEIFSTNRLNMFLGIRQDEVKFLLRNLFQRSGQGFAREASRFRDIIKEILETSGASNAGDFLPFLQWQERGKTKTFVDSMLALQNSEPEYYADHIIKGMILTLLTAGTDTSAVTMEWAMSLLLNHPTVLDKVKTELDCKIGHQRLVEEPDLSDLPYLRAIVNETLRLFPAAPLLVAHESSDDCSIGGYDVRGGTMLLVNAWAIHRDAKVWEDPTTLVQCFEWQRVGEVEVDMSEGKGLTMPKAQPLEAMCRARNSMIKVLSEL* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8050119 8054991 + Vvi18g698 Vvi18g698 780401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g698 599 Gene3D Cytochrome P450 222 594 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS P450 superfamily signature 442 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS P450 superfamily signature 495 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PANTHER CYTOCHROME P450 82C3-RELATED 373 404 - -
Vvi18g698 599 PANTHER CYTOCHROME P450 82C3-RELATED 27 91 - -
Vvi18g698 599 PANTHER CYTOCHROME P450 82C3-RELATED 406 551 - -
Vvi18g698 599 PANTHER CYTOCHROME P450 82C3-RELATED 551 598 - -
Vvi18g698 599 PANTHER CYTOCHROME P450 82C3-RELATED 229 373 - -
Vvi18g698 599 SUPERFAMILY Cytochrome P450 237 589 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 SUPERFAMILY Cytochrome P450 29 152 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 Pfam Cytochrome P450 363 550 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 Pfam Cytochrome P450 237 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS E-class P450 group I signature 264 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS E-class P450 group I signature 288 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS E-class P450 group I signature 494 512 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PRINTS E-class P450 group I signature 535 559 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g698 599 PANTHER - 229 373 - -
Vvi18g698 599 PANTHER - 551 598 - -
Vvi18g698 599 PANTHER - 406 551 - -
Vvi18g698 599 PANTHER - 373 404 - -
Vvi18g698 599 PANTHER - 27 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g698 - - K13260 vvi:100260801 742.651
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g992 Vvi18g698 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g698 Blo01g01509 . . . . . . . . . Cma01g01805 Cma09g00267 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01511 Csa04g02453 . . . . . . . . . . . Cmo01g01862 . . . . . . Cpe02g00204 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477