Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g699 ATGGAGACTGTTTATCCAGTTGCCACATTCAAAGTGCCTCCTCGCCCCCTTCTCCCAAGTATCAAAAGTAACGTCACTAGTTTCCGATTTTTACACTCCCACCTACGAAATAAACAACTTGAGTTTCAGAATCACGGCTTTTCTTCTCAATTTATATTCAGATGTAGTGCCTGTAGCAAATTCTTGGTTTCTCAATCTGAACACGAAAGATTAAAGTGCGCACAGCAACTGTTTGATAATTTTCCCAATAGGGATGTGATCTCTTGGTCCGCTCTCATTGCTGCTTATTCTCGATGTGGGAATTTTGCCCAAGCATTTGGTTTGTTCCAGAAAATGATGGGTGAAGGATTGCAGCCCAATGGATTTTCATTAGCCAGCTTGCTCAAGGTGAGTTGTAGTACGGGGGAAATTGGACTTTGCAGACAGCTCCATGGCTGGTCTATCCGAACCGGTTTTGGATTAGATTCTGGAATAAGGGCTGCCTGGATAACCATGTATTCCCGTTGTGGTGTGTTGGAAGATGCCCAGAGGGTTTTTGACGAGACCTCTCTTCTTGCTCTCGATATCCTCTTGTGGAATTCAATTATAGCAGCCTATATCTTCCATGGGTGTTGGGTTGAGGTGCTTCGTCTGTTTTGCAAAATGGTGTCAGTTGGGGTTGTTGCACCAACAGAGCTCACCTATGCTAGTGTTGTCAATGCTTGTGGTTCTTCAGGTGAGGAGAAGTATGGAGCAATGGTTCATGGAAGGATCATCAAAGCTGGACTTGAAGCAACTAATCTATGGAATTCTCTTGTTACATTTTATGGCAAATGTGGGAACTTACAACATGCAAGCCAATTATTTGAGAGGATTTCTAGGAAGGATGTTGTTTCATGGAATGCAATGATTGCAGCCAATGAACAAAGAGGAGAAGGGGAGAATGCTCTAGGTTTATTCCGTAGGATGCTCAAAGTTGAACCGCCTGTTCAACCAAATCGTGTCACTTTTCTTAGTTTGCTTAGTGCTGTTTCTGGGCTTTCAGCTTTAAGGTGTGGAAGAGAAATTCATGCTCATATCTTTAGACTCAGCCTTGAAGTTGATACCAGCATCACCAATTCTCTCATCACCTTTTATTCAAAATGCAGGGAAGTTGGCAAAGCAAGAGAGATTTTTGAGAGGTTGTTGTTAAGGGATATCATTTCATGGAATTCAATGCTTGCTGGATATGAGCAGAATGAGCAGCAAGGAAGATGTTTTGATATCTTTAAGAGAATGATGCTTTCAGGGATTGAGCCAGATTCACACAGTCTCACTATTATTTTCAATGCAGCTTCTCGTGATTCATCCGGGTTAATATATTTTCGAAGGGGTAAAGAAATTCATGGGTATATTTTGAGGAGAATTACCCCAGGAGGTGTGAGTTTGTCAGTCTCTAATGCAATTCTTAAAATGTATGCAAAATTCAACCGTATAGCAGATGCTGAGAAGATTTTCAAGGGGATGAAGAATAGGGATTCATACTCCTGGAATGCAATGATGGATGGGTATTCAAGAAATGCCAAGTTTGAGGATGTCCTAATGATTTTTCTAGATATTCTTAAGCAAGGTTTCCCATTAGATCATGTGAGCCTCTCAATTCTCCTTACGTCCTGTGGCAGATTGGTTTCCCTCCAACTGGGTAAGCAGTTTCATGCTGTTGTTGCCAAACTCTTCAATGGCCAGGATTGTCCTCACCAGGATTCTCTTTTGTCAATCAACAATGCATTGATTTCCATGTATTCAAAATGTGGAAGTATTAAAGATGCTGCCCAAGTATTTTTAAAGATGGAAAGGAAGGACGTCTTTTCTTGGACAGCTATGATCACAGGCTGCGCACACCATGGACTGGCTGTTGAAGCCCTTCAGCTATTTGAGAGAATGAAAACAGATGGCATCAAGCCCAACCAGGTAACTTTCCTCGCACTACTCATGGCTTGCGCTCATGGGGGTCTTGTTCAAGAGGGGAGCTATTATTTTGACTCCATGTACAATGATTATGGTCTAAGCCCAAGTATTGAACACTATGCATGCATGATTGATTTGTTTGGCCGATCAGGTCAGTTTGATCGTGCAAAAAGCCTGGTTGAGTTTGGAATCACTCTCTTTAAGCCCTATCATGATGATATCTTGAACCTGTGGAAGGTTTTACTTGGGGCATGTCATGCGTCTAAGCAGTTAGATCTTGGGGTAGAGGCTGCAACAAAGATTCTTGAATTGGAACCTGAAGATGAGGCTACCTACATTCTTCTAGCGAACCTTTATGCCTCTTCAGGCTTATGGGAGGATGCAATCAAGGTTAGGAAGGCAATGAGAGATAAAGGGCTAAGGAAGGAAGTTGGGTGCAGCTGGATAGATACTGGAAACAGGAGACACGTCTTTGTGGCAGGAGATGTATATCATCCTCAGAGAAAAGAGATATATGAGAAGCTGGCACAGTTGAATTATAGTTGTAGAAGGATGGGCTATGTCCCCATGACAGAGCTTGTGCTTCATGATGTGGATGAGACAGAGAAGGAAGCAATTCTGGGATGTCATAGTGAGAAATTGGCGGTGTCTTTTGGTCTTTTGAATTGTGGGGTTGGCAATGGTGTAATTAGAGTGATGAAGAACTTGCGGGTGTGTGAGGATTGTCATAGCTGGATGAAATTTGCTTCCCTACTGGAGAAGAGGGAAATACTACTTAGGGATTCACAGCGATTCCATTTGTTTAGGGATGGCAGCTGTTCTTGTGGAGATTATTGGTAG 2766 42.48 METVYPVATFKVPPRPLLPSIKSNVTSFRFLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8069330 8072096 + Vvi18g699 Vvi18g699 780402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vvi18g699 921 SUPERFAMILY TPR-like 87 772 IPR011990 GO:0005515
Vvi18g699 921 Pfam PPR repeat family 499 545 IPR002885 -
Vvi18g699 921 Pfam PPR repeat family 606 654 IPR002885 -
Vvi18g699 921 Pfam PPR repeat family 84 132 IPR002885 -
Vvi18g699 921 Pfam PPR repeat family 392 437 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 192 220 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 262 289 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 291 318 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 682 702 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 473 498 IPR002885 -
Vvi18g699 921 Pfam PPR repeat 366 391 IPR002885 -
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vvi18g699 921 TIGRFAM PPR: pentatricopeptide repeat domain 609 642 IPR002885 -
Vvi18g699 921 TIGRFAM PPR: pentatricopeptide repeat domain 87 120 IPR002885 -
Vvi18g699 921 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Vvi18g699 921 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Vvi18g699 921 TIGRFAM PPR: pentatricopeptide repeat domain 581 608 IPR002885 -
Vvi18g699 921 Pfam DYW family of nucleic acid deaminases 828 921 IPR032867 GO:0008270
Vvi18g699 921 Gene3D Tetratricopeptide repeat domain 462 565 IPR011990 GO:0005515
Vvi18g699 921 Gene3D Tetratricopeptide repeat domain 49 152 IPR011990 GO:0005515
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Vvi18g699 921 Gene3D Tetratricopeptide repeat domain 578 747 IPR011990 GO:0005515
Vvi18g699 921 Gene3D Tetratricopeptide repeat domain 321 446 IPR011990 GO:0005515
Vvi18g699 921 Gene3D Tetratricopeptide repeat domain 161 320 IPR011990 GO:0005515
Vvi18g699 921 PANTHER - 45 239 - -
Vvi18g699 921 PANTHER - 323 523 - -
Vvi18g699 921 PANTHER - 243 440 - -
Vvi18g699 921 PANTHER - 188 338 - -
Vvi18g699 921 PANTHER - 449 793 - -
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Vvi18g699 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Vvi18g699 921 SUPERFAMILY TPR-like 565 753 IPR011990 GO:0005515
Vvi18g699 921 Pfam E motif 733 792 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g699 - - - vvi:104882530 1857.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068983 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1