Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g7 ATGGAGGCCAGTGCCGGTTTAGTGGCTGGCTCTCATAACCGCAATGAGTTGGTCGTCATCCGTCGCGACGGTGAATCTGGACCAAAGCCGTTGCAGCAGCTGAGTGGACAAATCTGCCAGATATGTGGAGATGATGTTGGGCTAAATGTGGATGGGGAGCTGTTCGTGGCCTGCAATGAATGTGCCTTCCCGGTTTGCAGAACTTGCTACGAGTACGAGCGCAGAGAAGGAAGCCAAGTGTGCCCCCAGTGCAAGACTAGGTTTAAACGTCTCAAGGGTTGTGCTAGAGTTGAGGGTGATGAAGAAGAAGACGACATTGACGATGTGGACAACGAGTTCAATTTTGAAGGGAGGGGTAAAGTGGATATGCAGGGTGCTCTTGCTGAAGCAATGCTTCAGGGCCACATGACCTATGGCCGCGCCTATGATTCTGACCTTCCTCATGTCTTTCATACCATGCCCCAAGTTCCTCTCCTTACCAACGGTCAAATGGTTGATGATATTCCTCCTGAGCAACATGCTTTGGTCCCTTCTTTCATGGGTGGTGGAGGCAAAAGAATCCACCCCCTTCCTTTCTCAGATCCTAACCTTCCAGTGCAACCCAGATCCATGGATCCCTCCAGGGACTTGGCTGCATATGGATACGGAAGTGTAGCTTGGAAGGAAAGGATGGAGAATTGGAAACAGAAACAAGAAAAATTACAGATGATGAAGAATGAAAATGGCGGCAAAGATTGGGACAATGATGGAGATGGGCCAGAGCTGCCACTGATGGATGAAGCAAGACAGCCATTGTCAAGAAAGTTGCCTATTTCGTCTAGCCAAATCAACCCATACCGAATGATCATCATAATACGATTGGTTGTCCTTGGTTTCTTCTTCCATTATCGAGTAATGCATCCTGTGAATGATGCTTATGCATTGTGGCTAGTCTCTGTCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGGTATGAGAAGGAAGGTCAACCTTCTCAACTATCTCCGGTGGATATATTTGTGAGTACAGTTGATCCACTAAAAGAGCCTCCTCTGGTGACTGCGAATACGGTTTTATCCATTCTTGCTGTGGATTACCCTGTTGACAAGGTCTCTTGTTATGTTTCTGATGATGGTGCTGCTATGCTGACATTCGAAGCCTTGTCAGAAACATCAGAGTTTGCAAGGAAGTGGGTCCCTTTCTGCAAGAAGTTCAACATTGAGCCACGGGCACCCGAGTTTTATTTTGCTCAGAAGATAGATTACCTCAAAGACAAGGTGCTACCTTCATTTGTGAAGGAACGAAGAGCAATGAAGAGAGAATATGAGGAATTCAAAGTTCGGATCAATGCTTTGGTTGCCAAGGCACAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACTCCATGGCCTGGGAATAACATCCGAGATCATCCTGGAATGATTCAGGTTTTTCTTGGTCAAAGCGGGGGGCATGACACAGATGGTAATGAATTGCCACGATTGGTATATGTCTCTAGAGAAAAGCGACCTGGGTTTAATCACCACAAAAAGGCTGGTGCGATGAATGCTTTGGTCCGAGTCTCTGCTGTGCTCACAAATGCACCATATCTGTTGAACTTGGATTGTGATCACTACATCAATAACAGTAAGGCTCTTAGGGAGTCTATGTGTTTCATGATGGATCCATTGCTTGGAAAGAGAGTCTGCTATGTTCAGTTCCCCCAGAGGTTTGATGGTATTGACAAAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATTAACATGAAAGGTTTAGATGGCATTCAAGGACCCATATATGTTGGGACTGGATGTGTGTTCAGAAGGCAAGCGCTATATGGTTATGATGCTCCAAAGACAAAGAAGCCACCGACAAGGACATGCAACTGCTGGCCAAAATGGTGCTGCTGTGGTGGAAGGAAGAAGAAGAAGAAGACTAACAAGCCTAAGTCTGAACTAAAGAAGAGAAATTCTAGGAAGGCAGATGCTGGAGGACATGTTCCTGTGTGTGCTTTAGAGGGTATTGAAGAGGGAATTGAAGGTATTGAAAGTGAAAATGTGGCTCTCATGTCTGAGCAGAAGCTGGAAAAGAAGTTTGGACAGTCTCCTGTATTTGTTGCCTCTACGCTGCTAGAGAATGGTGGCACACTAAAAAGTGCCAGCCCAGCTTCCTTGCTTAAGGAAGCCATTCATGTGATTAGCTGTGGCTATGAAGATAAAACAGAGTGGGGAAAGGAGGTTGGCTGGATATATGGCTCGGTTACGGAGGATATCTTGACGGGCTTTAAAATGCATTGCCATGGATGGCGATCCATATATTGTATACCTTCAAGACCTGCATTTAAAGGATCTGCACCCATCAATCTTTCTGATCGTCTTCACCAGGTCCTTCGGTGGGCTCTTGGTTCAATTGAAATTTTCTTGAGCCGGCATTGTCCCCTGTGGTATGGGTATGGAGGTGGTCTGAAATGGTTAGAGCGTCTGTCGTACATAAATGCTACTGTATATCCATGGACTTCAATTCCCCTGCTAGCATATTGTACCTTACCTGCTGTCTGCTTGCTCACTGGGAAATTTATTACTCCAGAGCTTAGCAACGTTGCTAGCTTGTGGTTTCTGTCACTTTTCATTTGTATTTTTGCAACTGGTATCCTGGAAATGAGATGGAGTGGAGTTGGAATTGATGAATGGTGGAGAAATGAACAAGCTGTATGCTTTCAAGTGGACCACATTGCTCATCCCACCCACCACACTGCTGATAATAAACCTGATTGGAGTTGTTGCTGGCATCTCAAATGCAATAAATAA 2910 45.57 MEASAGLVAGSHNRNELVVIRRDGESGPKPLQQLSGQICQICGDDVGLNVDGELFVACNECAFPVCRTCYEYERREGSQVCPQCKTRFKRLKGCARVEGDEEEDDIDDVDNEFNFEGRGKVDMQGALAEAMLQGHMTYGRAYDSDLPHVFHTMPQVPLLTNGQMVDDIPPEQHALVPSFMGGGGKRIHPLPFSDPNLPVQPRSMDPSRDLAAYGYGSVAWKERMENWKQKQEKLQMMKNENGGKDWDNDGDGPELPLMDEARQPLSRKLPISSSQINPYRMIIIIRLVVLGFFFHYRVMHPVNDAYALWLVSVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKEGQPSQLSPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNIRDHPGMIQVFLGQSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAPYLLNLDCDHYINNSKALRESMCFMMDPLLGKRVCYVQFPQRFDGIDKNDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKKPPTRTCNCWPKWCCCGGRKKKKKTNKPKSELKKRNSRKADAGGHVPVCALEGIEEGIEGIESENVALMSEQKLEKKFGQSPVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPSRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGYGGGLKWLERLSYINATVYPWTSIPLLAYCTLPAVCLLTGKFITPELSNVASLWFLSLFICIFATGILEMRWSGVGIDEWWRNEQAVCFQVDHIAHPTHHTADNKPDWSCCWHLKCNK* 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 159413 165445 - Vvi18g7 Vvi18g7 779710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g7 969 Pfam Cellulose synthase 359 937 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi18g7 969 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 937 - -
Vvi18g7 969 Coils Coil 457 477 - -
Vvi18g7 969 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Vvi18g7 969 SUPERFAMILY RING/U-box 23 111 - -
Vvi18g7 969 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Vvi18g7 969 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 869 IPR029044 -
Vvi18g7 969 MobiDBLite consensus disorder prediction 675 696 - -
Vvi18g7 969 PANTHER CELLULOSE SYNTHASE 1 937 - -
Vvi18g7 969 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 513 656 IPR029044 -
Vvi18g7 969 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g330 Vvi18g7 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g7 K10999 - vvi:100242715 1868.59