Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g70 ATGCTCTTACCTTTATGCCATGGGCATATAAATATACCTATTTACCTTCCGTATATATTTTTGAAATCCAATCTCATGGCTCCCACTTCACTACTTCTCCTGCCACTTCTCCTCCTTCTCTGCCTATTTCCGGCGGTTTCCTCCGTCGGCGTAAACTACGGCACTCTCGGAAACAACCTCCCTCCGCCCAAGAAGGTGGCTCAGCTACTCCAATCCACTCTCATCGACAAGGTCAAGATCTACGACACAAACCCAGAAATCCTAGAGGCCTTTTCCAACACAGGCATAGACCTCATCGTCGCCGTCGAAAATTACCACGTCTCCAACATCAGCTCCGATGTGGCCGCCGCCGACGAGTGGTTCGCCACCCGCGTCGCGCCCTTCATTCCCGCCACTTCCATCGTCGCCATTGCAGTGGGTAATGAGTATTTGACCACTGATACTGACCACTTGGCCCTTAATGCCCTGGTTCAAGCAATGCAGAACCTTCATGGAGTCCTACTAGCTCGTGGACTCGACCGGAAAATCAAGGTCACCACCCCACATAGTATGGCTGTGCTCGCTTCTTCGTTTCCTCCTTCAGCTTCCACCTTCGCCCTGGAACTCATCCCAACCATGACCTCCATTGTTGGGTTCATAGCTGATACTGGTGCGCCATTCATGATCAACGCCTACCCATATTTTGCCTACAGAGACAATCCGGGAAAAATCGATCTGGAATACGCATTGCTCGGGAACACAACTGGGGTACGCGACCCAAAGGGGTTTGTGTATAACAACATGCTCGATGCCCAAATCGACGCCGTCCGATCAGCCATCAACGCTCTGGGTTTCGGAAATCGGACCATAGAGATCACCGTATCGGAATCCGGGTGGCCGTCGAAGGGTGAGGCTGGGGACTCCGCGGCCACACCGGAAAACGCAAAAAAATACAATACCAGACTGATCGAACGTGGGCAGTCAGATAAAGGCACACCCATGAGGCCGAAGGACAAGGTGGAGGTGTTTGTGTTCGCTTTGTTCAATGAGAACAAAAAGGGAGGTGGAGTGAGTGAGAGAAACTTTGGGATTTTGAACGGCGACGGGTCTAAGGTATATGAGATAGATTTGAGCTGTAAATTCTGCAGCGGCAATGGAGGTGCGGTGGGGTTCGGTGAGAAAGTAGCGAACGCAGCGAGGGGTCCTTCGGTTTGGTGCGTAGCAAAGCCCCATGCAGATGAGAAGGTGCTGCAGGCGGTGCTGGACTTCTGCTGTGGGCCTGGTGGGGTGGACTGCAGAGAGATATATGGAAGTGGGGATTGTTTTGAGCCGAATAAGCTTCATGCACATTCATCATACGCCATGAATGCGTATTATCAGATGCATGGGAGGAACTACTGGAACTGTGATTTCAAAGGCGCTGGCCTCGTTACCTTCGGTGATCCAAGTTATGGGAGATGCCGATATCCTCAACAGTGA 1458 51.65 MLLPLCHGHINIPIYLPYIFLKSNLMAPTSLLLLPLLLLLCLFPAVSSVGVNYGTLGNNLPPPKKVAQLLQSTLIDKVKIYDTNPEILEAFSNTGIDLIVAVENYHVSNISSDVAAADEWFATRVAPFIPATSIVAIAVGNEYLTTDTDHLALNALVQAMQNLHGVLLARGLDRKIKVTTPHSMAVLASSFPPSASTFALELIPTMTSIVGFIADTGAPFMINAYPYFAYRDNPGKIDLEYALLGNTTGVRDPKGFVYNNMLDAQIDAVRSAINALGFGNRTIEITVSESGWPSKGEAGDSAATPENAKKYNTRLIERGQSDKGTPMRPKDKVEVFVFALFNENKKGGGVSERNFGILNGDGSKVYEIDLSCKFCSGNGGAVGFGEKVANAARGPSVWCVAKPHADEKVLQAVLDFCCGPGGVDCREIYGSGDCFEPNKLHAHSSYAMNAYYQMHGRNYWNCDFKGAGLVTFGDPSYGRCRYPQQ* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 691255 696212 + Vvi18g70 Vvi18g70 779773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g70 485 Pfam Glycosyl hydrolases family 17 49 369 IPR000490 GO:0004553|GO:0005975
Vvi18g70 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 12-LIKE 31 479 - -
Vvi18g70 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 31 479 IPR044965 GO:0004553|GO:0005975
Vvi18g70 485 SUPERFAMILY (Trans)glycosidases 49 368 IPR017853 -
Vvi18g70 485 Pfam X8 domain 398 468 IPR012946 -
Vvi18g70 485 SMART X8_cls 397 482 IPR012946 -
Vvi18g70 485 Gene3D - 392 480 - -
Vvi18g70 485 Gene3D Glycosidases 47 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g70 - - - vvi:100252971 917.146
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g70 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2