Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g701 ATGGGAAGCTCTGTCGATGCCTCCGCAACCGAAACCGACGGCGACACCACCGAAACCGACATCGACGTCGACGCCGACAGCGACACCGATGACTACCCTCCCCTTTCCGATTCGTGTCCCTTTTCTGAAGGAGAGAAGGTCCTCGCTTATCATAACCTTCGTATTTATCCAGCCAAGGTGCGAAGAATTGAATTTCAGATGAATGAATGGAAGTATTTTGTTCATTACCTTGGTTGGAGCAAAAACTGGGATGAATGGGTGGGCATGGATCGGCTGCTGAAATTTAGTGAAGAGAATGTCCAAAAACAGAAGGCCCTGGGAAAAAAACAGGGCATAGACAAAAACACAAAGCCAGTGCGTGCCTCACAGATTAAGCCAAAAAATTTTGCAAGAGGCAAGAAGTGGAAGAATGACTGTGTCACTAAGAAGGAAGCTATACCAGTGGAGAAGCTTGTGAACATCCAAATTCCTCCAACACTGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATCTTGATTACAGGATAAAGAGGGATGGCATGATATCTGATTCGGCTGGAGAAATTCTGAAAGGGTTACGTTGTTACTTTGACAAAGCATTGCCAGTGATGCTTCTGTATGAAAGGGAGCGTCAACAGTATCAAGAAGCAATTGCAAATAATGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTGTTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAAAAGAGTTACAAATGGAATTACTCGACTTTCTCAAGTTCCTGCAGAAGAATCAGAGTGCCTTCTTCCTCACCTCATATATTTCTTCCGCATGA 921 43.32 MGSSVDASATETDGDTTETDIDVDADSDTDDYPPLSDSCPFSEGEKVLAYHNLRIYPAKVRRIEFQMNEWKYFVHYLGWSKNWDEWVGMDRLLKFSEENVQKQKALGKKQGIDKNTKPVRASQIKPKNFARGKKWKNDCVTKKEAIPVEKLVNIQIPPTLKKQLVDDCEFITHLGQLIRLPRAPTVDKILKKYLDYRIKRDGMISDSAGEILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRLFVKLPELLFHANIEKETSKELQMELLDFLKFLQKNQSAFFLTSYISSA* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8092083 8129064 + Vvi18g701 Vvi18g701 780404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g701 306 PIRSF EAF3_MRG15 35 306 IPR008676 GO:0005634|GO:0006325|GO:0006355
Vvi18g701 306 MobiDBLite consensus disorder prediction 13 31 - -
Vvi18g701 306 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 1 303 - -
Vvi18g701 306 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 1 303 IPR008676 GO:0005634|GO:0006325|GO:0006355
Vvi18g701 306 Gene3D - 25 122 - -
Vvi18g701 306 MobiDBLite consensus disorder prediction 1 38 - -
Vvi18g701 306 Pfam RNA binding activity-knot of a chromodomain 42 92 IPR025995 -
Vvi18g701 306 Pfam MRG 146 303 IPR026541 -
Vvi18g701 306 Gene3D MRG domain 148 306 IPR038217 -
Vvi18g701 306 CDD CBD_MSL3_like 45 101 - -
Vvi18g701 306 SUPERFAMILY Chromo domain-like 38 172 IPR016197 -
Vvi18g701 306 ProSiteProfiles MRG domain profile. 148 306 IPR026541 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g701 K11339 MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1 - vvi:100266105 586.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1004 Vvi18g701 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69