Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g702 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCACCCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGGAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGAAGGCAAACATATCGTTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCCCTGCTAAAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGGCTTGTCTCTTCAAGAACCAAAACCAACTTTTTCCCAGGGTTTTATTATTTCTATTTTGACAACAATAATGTCCTCATTCTTGTCTTCGATGGGCCAGACGCTTCAAGCATTTACTGGCCCCCATCGTGGATGGAAAACTGGCAGGCGGGAAGATCGGCATACAACAGCAGCAGAATTGCATTACTAGATTACTTTGGCTGTTTTTCCTCAACCGACGATTTTGGGTTTCAGTCCTCGGATTTTGGTGAGAAAGTCCAAAGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGGGAGAAATAAGTGGGTTGTTACTTGGCAAGCCATCACGCTACAATGCAACATCCATGGAATATGCGGACCCAACAGTATTTGTACCTATGTGCCTGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATACCAAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTTGACTTCTACGGCTATGATTATGGCTATTACCCTAATTACACCTTAAAGATGTGTGAAAAACTGTGCTTGGAAATATGTGGCTGCATAGGATTTCAATACAGCTATACTTCGGATGTTTATAAATGTAATCCTAAGCGGCTGTTGCTCAACGGATACCGCTCGCCTAGTTTTGTAGGACATATATATCTAAAATTGCCTAAAGCTAGTCTTCTTTCCTATGAAAAACCGGTTAAGGAATTCATGTTAGATTGCTCAGGCAACCGCTCAGAGCAGCTAGTAAAATCTTATGCAAAAGCCCACGAAAATGAAAAAGCAACACGGGGTTTCAGCGAGGAGATTGGAAGAGGAGGAGGTGGGGTTGTATATAAAGGTGTCTTGTCAGACCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGTTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGTGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGATATTGCGGTGGGCACAGCAAAAGGCCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGAACAGAGGAGGAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGGTTACCGGCCGAAGGAGTGCTTCAATGGCCATCCACGGTACAGATGGCATAGGGGAACGTCAGAGTTTGGTGGCATGGGTGAAAGGGAAGATGAATGGAGCAACTGCAGTTGCTTCGTGGATGAAAGAAATCCTAGACCCGTCGATGGAAGGCGAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTTTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCACGTGGTCGAGACGCTTCTCCGCCCTGAACGTGGAAACAATCTTCACTACTAA 2142 45.1 MDAPVLLLLLTLLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYEGKHIVVWMANRNQPVNGNFSKLSLLKSGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFPGFYYFYFDNNNVLILVFDGPDASSIYWPPSWMENWQAGRSAYNSSRIALLDYFGCFSSTDDFGFQSSDFGEKVQRRLTLDIDGNLRLYSFEEGRNKWVVTWQAITLQCNIHGICGPNSICTYVPGSGSGRRCSCIPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLLLPHVDFYGYDYGYYPNYTLKMCEKLCLEICGCIGFQYSYTSDVYKCNPKRLLLNGYRSPSFVGHIYLKLPKASLLSYEKPVKEFMLDCSGNRSEQLVKSYAKAHENEKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRFNHMNLIEMWGYCFVGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWNRGGINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRRSASMAIHGTDGIGERQSLVAWVKGKMNGATAVASWMKEILDPSMEGEYDMGEMEILVAVALQCVELDKDERPTMSHVVETLLRPERGNNLHY* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8135121 8137527 + Vvi18g702 Vvi18g702 780405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g702 713 Gene3D Phosphorylase Kinase; domain 1 430 529 - -
Vvi18g702 713 Pfam D-mannose binding lectin 77 167 IPR001480 -
Vvi18g702 713 ProSiteProfiles Protein kinase domain profile. 455 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g702 713 CDD PAN_AP_plant 331 414 - -
Vvi18g702 713 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g702 713 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 451 - -
Vvi18g702 713 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 571 707 - -
Vvi18g702 713 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 450 570 - -
Vvi18g702 713 SUPERFAMILY Protein kinase-like (PK-like) 447 702 IPR011009 -
Vvi18g702 713 SMART blect_4 32 150 IPR001480 -
Vvi18g702 713 Pfam S-locus glycoprotein domain 247 318 IPR000858 GO:0048544
Vvi18g702 713 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 193 IPR036426 -
Vvi18g702 713 CDD EGF 285 320 - -
Vvi18g702 713 Gene3D Transferase(Phosphotransferase) domain 1 532 572 - -
Vvi18g702 713 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 450 570 - -
Vvi18g702 713 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 571 707 - -
Vvi18g702 713 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 6 451 - -
Vvi18g702 713 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Vvi18g702 713 Gene3D Transferase(Phosphotransferase) domain 1 573 710 - -
Vvi18g702 713 Pfam Protein kinase domain 458 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g702 713 Pfam Protein kinase domain 578 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g702 713 CDD B_lectin 36 150 IPR001480 -
Vvi18g702 713 Gene3D - 20 149 IPR036426 -
Vvi18g702 713 PIRSF SRK 572 710 IPR024171 GO:0004674
Vvi18g702 713 PIRSF SRK 426 570 IPR024171 GO:0004674
Vvi18g702 713 PIRSF SRK 1 427 IPR024171 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g702 - - - vvi:100254036 895.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g702 . . . Bda03g00196 . . . Bma01g02260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76382 PF00069 Pkinase 9.10E-12 CL0016 Vvi PK