Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g703 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCAACCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGGAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACCGCTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCGCTGCTAGAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGACTTGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGGTTTTATAAGTTCTATTTTGACAACAATAATGTCCTCATTCTTGTCTTCGATGGGCCGGACGCTTCAGGCATTTACTGGCCCCCATCGTGGCTTTTTCAGTCCTCGGATTTTGGTGAGAGAGTCCAAAGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGGGAGAAATAAGTGGGTTGTTACTTGGCAAGCCATCACGCTACAATGCAACATTCATGGAATATGCGGACCCAACAGTATTTGTACCTATGTGCCTGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATTCCTAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCTACTCACACACTTTGAGTTCTACGGCTATGATTATGGCTATTACCCCAATTACACCTTACAGATGTGTGAAAAACTGTGCTTGGAAATATGTGGCTGCATGGGATTTCAATACAGCTATACTTCGGATAATTATAAATGTTATCCTAAGCGGCTGTTGCTCAACGGATACCGCTCGCCTGGTTTTTTAGGACATATATATCTAAAATTGCCTAAAGCTAAGCAGCTAGTAAGATCTTATGCAAAAGCCCACGAAAATGAAGTGTTAAAGTTCATCCTCTGGTTTGCGTGCGCAATTGGAGCAGTTGAGATGGTTTGCATCTGTATGGTGTGGTGTTTCTTGATGAAGGCCCAGCAAAACACCAGTACAGATCCGCCAGGCTACATTTTAGCTGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGCAGAGGAGGAGGTGGGGTTGTATATAAAGGTGTCTTATCAGATCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGATATTGCGGTGGGCACAGCAAAAGGCCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACGTTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGAAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGGTTACCGGCCGAAGGAGTGCTTCAATGGCCATCCACGGTACAGATGGCATAGGGGAACGTCAGAGTTTGGTGGCATGGGTGAAAGGGAAGATGAATGGAGCAACTGCAGTTGCTTCGTGGATGAAAGAAATCCTAGACCCGTCGATGGAAGGCGAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTTTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCAGAACAGAGTAATTTTAAGTAGAATAATTGAGAAGCCAAATCTTTTGATACAACATACAATATAA 2259 44.67 MDAPVLLLLLTLLLSSPLPSSNLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYDGKHTAVWMANRNQPVNGNFSKLSLLESGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGFYKFYFDNNNVLILVFDGPDASGIYWPPSWLFQSSDFGERVQRRLTLDIDGNLRLYSFEEGRNKWVVTWQAITLQCNIHGICGPNSICTYVPGSGSGRRCSCIPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLLLTHFEFYGYDYGYYPNYTLQMCEKLCLEICGCMGFQYSYTSDNYKCYPKRLLLNGYRSPGFLGHIYLKLPKAKQLVRSYAKAHENEVLKFILWFACAIGAVEMVCICMVWCFLMKAQQNTSTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDVNYQPKVADFGLSKLQNRGEINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRRSASMAIHGTDGIGERQSLVAWVKGKMNGATAVASWMKEILDPSMEGEYDMGEMEILVAVALQCVELDKDERPTMSQNRVILSRIIEKPNLLIQHTI* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8151294 8153837 + Vvi18g703 Vvi18g703 780406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g703 752 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Vvi18g703 752 ProSiteProfiles Protein kinase domain profile. 460 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g703 752 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 205 IPR036426 -
Vvi18g703 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 576 588 IPR008271 GO:0004672|GO:0006468
Vvi18g703 752 SMART serkin_6 460 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g703 752 Pfam Protein kinase domain 463 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g703 752 Gene3D - 20 149 IPR036426 -
Vvi18g703 752 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g703 752 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 208 732 - -
Vvi18g703 752 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 210 - -
Vvi18g703 752 Gene3D Transferase(Phosphotransferase) domain 1 535 749 - -
Vvi18g703 752 Pfam S-locus glycoprotein domain 218 287 IPR000858 GO:0048544
Vvi18g703 752 SMART blect_4 32 150 IPR001480 -
Vvi18g703 752 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 208 732 - -
Vvi18g703 752 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 6 210 - -
Vvi18g703 752 Pfam D-mannose binding lectin 76 167 IPR001480 -
Vvi18g703 752 SUPERFAMILY Protein kinase-like (PK-like) 436 732 IPR011009 -
Vvi18g703 752 PIRSF SRK 1 214 IPR024171 GO:0004674
Vvi18g703 752 PIRSF SRK 206 751 IPR024171 GO:0004674
Vvi18g703 752 CDD B_lectin 36 150 IPR001480 -
Vvi18g703 752 Gene3D Phosphorylase Kinase; domain 1 426 534 - -
Vvi18g703 752 CDD EGF 254 289 - -
Vvi18g703 752 CDD PAN_AP_plant 300 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g703 - - - vvi:100247193 1414.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g703 . . . . . Bpe04g00168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76383 PF00069 Pkinase 6.80E-49 CL0016 Vvi PK