Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g704 ATGCTTTTAGAAACCCAACACGATGGCACAAGCAAAACTTGGCCCGAGGGGCAATGTGAATTTCCCCCCTTCACCCCAGTCAAGGAGTCAATTTATTTTCTAAACTCTGGTAGCACCGTACACTTGCATTCTCCATTGCAAATATCTGATCAGGAAACAGAGCACATAAACCATATCCCAAAACTCATGGATAGGACAGTTGGTTTCTTTGTTTTGGCTTTGCTATTAACTTGCTATCCATCTTCATCTGAAACGTATGATACTCTGAGCGAAGGCTCGTCTCTTTCCGTGGAGAAATCAAATGATCTTCTCATTTCAGCAAATGGTATATTCTCTGCTGGGTTTTATCAGGTCGGCAACAACACTTTCTGCTTCGCCATATGGTTTACAAAATCATGGGGTGCAACCACAGTTTGGATGGCGAACCGTGACCAACCGGTCAACGGTAGAGGCTCCAAGCTTTCTTTGTTGAGGAATGGCAATCTCCTCTTAACTGATGCTGGTAAAATCATGGTTTGGATGATCAACACCGTTTCAACCTCATCTGCGAGATTACAGCTCCTTAACACCGGCAATCTTGTTCTATATGCTTGGGAGAAGACGGTGATTTGGCAGAGCTTTGACTCACCCACAGATACTCTTCTTCCTCACCAGATACTGACCAAAGATACCAGCCTTATCTCCTCAAGAAGCCAAAGCAACTATTCTTCTGGTTTTTATAAGCTATTTTTTGACAGTGATAACGTCATCCGCCTTCTCTTCAATGGTACTGAGGTTTCCAGCATCTACTGGCCAGACCCAAGCCTGGTGACCTGGGATGCTGGAAGAAGCACATACAACAACAGTCGAATCGCAGTATTCGATTCTTTGGGTTATTATAGAGCATCAGATGATTTGGAATTTCGAGGAACCTGGTCGGTTTCATGGCAGGCTATCTCCCAACCATGCCAGATTCATGGCATCTGCGGACCCAACAGTCTCTGCAGTTACACCCCTGCTTATGGCAGAGGATGCTCTTGCATGCCTGGATTCAAGATTGTAAATTCAACTGACTGGTCTTATGGGTGCGCACCAGAAACTGATATCGCTTGTAACCAAACTGAGGTGGGCTTCTTCCCACTCCCTCATGTTCAACTCTACGGCTATGACTATGGTCACTACCCCAATTACACCTATGAAAGCTGTGAAAATCTATGCTTACAGTTGTGCAAATGCAAGGCCTTCCTGCTAAATTTTAGCGACGGCCTTTACGGTTCTAGTCTCTTTCCCAGATATGATCCTCTTGAAGAATTCACCATAAATTGTTCAGGCAACACTCTCTCGACCATGCAAGGCTACATCCTCGTTGCAAACGGGTTTAAAAGATTCAGCTATGCAGAGTTGAAGAAGGCCACGCGAGGTTTCACCCAAGAGATTGGAAGAGGAGAGGGGAAGCACCGGCTGTTGGTGTATGAGTACATGGAACATGGATCCTTGGCACAAAAGCTATCTTCCAATACTCTTGATTGGGAGAAGAGGTTCCAAATAGCGCTTGGCACGGCCAGAGGCCTAGCTTATTTACACGAAGAATGCTTGGAGTGGGTTCTGCACTGTGATGTCAAGCCTCAGAACATACTCTTGGACTCTAATTACCAGCCAAAAGTGGCCGATTTTGGGATGTCGAAACTGCGAAACAGAGGAGGGCTTGACAATTCAAGTTTCTCGAGGATCAGAGGAACCAGAGGATACATGGCTCCTGAATGGGTATTCAACCTTCCCATAACCTCCAAGGTAGACGTTTATAGCTATGGAATCGTGGTTTTGGAGATGGTGACAGGGAAGAGCCCAACTGCTATCCCCGATACTGATGCCCAAGGAGAGACAGAGCAGCGTGGGTTGATTAAATGGGTGAGGGATCGAATGAATGGGATTGGTGCCAGGGGGTCGTGGATTGAAGACATCCTGGACCCTGTGATGCAAGGCGAATGCGACCTGCGCCGGATGGAAATTCTGATTGGAGTTGCCTTGGAATGTGTGGAGGAAGACAGGGACTCAAGACCCACGATGAGCCAGATAGTTGAGAAGCTTATGTGCCCGGAGGAGAGGCCGGAGGAGGACGGCTACCTCTCCATGTCCTGA 2118 46.98 MLLETQHDGTSKTWPEGQCEFPPFTPVKESIYFLNSGSTVHLHSPLQISDQETEHINHIPKLMDRTVGFFVLALLLTCYPSSSETYDTLSEGSSLSVEKSNDLLISANGIFSAGFYQVGNNTFCFAIWFTKSWGATTVWMANRDQPVNGRGSKLSLLRNGNLLLTDAGKIMVWMINTVSTSSARLQLLNTGNLVLYAWEKTVIWQSFDSPTDTLLPHQILTKDTSLISSRSQSNYSSGFYKLFFDSDNVIRLLFNGTEVSSIYWPDPSLVTWDAGRSTYNNSRIAVFDSLGYYRASDDLEFRGTWSVSWQAISQPCQIHGICGPNSLCSYTPAYGRGCSCMPGFKIVNSTDWSYGCAPETDIACNQTEVGFFPLPHVQLYGYDYGHYPNYTYESCENLCLQLCKCKAFLLNFSDGLYGSSLFPRYDPLEEFTINCSGNTLSTMQGYILVANGFKRFSYAELKKATRGFTQEIGRGEGKHRLLVYEYMEHGSLAQKLSSNTLDWEKRFQIALGTARGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGMSKLRNRGGLDNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSPTAIPDTDAQGETEQRGLIKWVRDRMNGIGARGSWIEDILDPVMQGECDLRRMEILIGVALECVEEDRDSRPTMSQIVEKLMCPEERPEEDGYLSMS* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8157248 8159843 - Vvi18g704 Vvi18g704 780407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g704 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vvi18g704 705 ProSiteProfiles Bulb-type lectin domain profile. 80 208 IPR001480 -
Vvi18g704 705 Pfam D-mannose binding lectin 136 224 IPR001480 -
Vvi18g704 705 Pfam S-locus glycoprotein domain 286 346 IPR000858 GO:0048544
Vvi18g704 705 ProSiteProfiles Protein kinase domain profile. 406 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g704 705 SUPERFAMILY Protein kinase-like (PK-like) 477 689 IPR011009 -
Vvi18g704 705 SMART serkin_6 425 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g704 705 Gene3D - 82 209 IPR036426 -
Vvi18g704 705 Pfam Protein kinase domain 477 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g704 705 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 67 302 - -
Vvi18g704 705 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 302 416 - -
Vvi18g704 705 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 476 695 - -
Vvi18g704 705 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 434 477 - -
Vvi18g704 705 SUPERFAMILY alpha-D-mannose-specific plant lectins 123 267 IPR036426 -
Vvi18g704 705 PIRSF SRK 436 476 IPR024171 GO:0004674
Vvi18g704 705 PIRSF SRK 476 699 IPR024171 GO:0004674
Vvi18g704 705 PIRSF SRK 58 297 IPR024171 GO:0004674
Vvi18g704 705 PIRSF SRK 276 425 IPR024171 GO:0004674
Vvi18g704 705 Gene3D Transferase(Phosphotransferase) domain 1 487 700 - -
Vvi18g704 705 SMART blect_4 95 210 IPR001480 -
Vvi18g704 705 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 434 477 - -
Vvi18g704 705 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 476 695 - -
Vvi18g704 705 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 67 302 - -
Vvi18g704 705 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 302 416 - -
Vvi18g704 705 CDD B_lectin 104 210 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g704 - - - vvi:100243693 763.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76384 PF00069 Pkinase 1.20E-36 CL0016 Vvi PK