Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g705 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCACCCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGAAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACCGCTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCGCTGCTAGAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGACTCGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAAGGAGAAATAATGGAAGGAGATGCTCTTGCATACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATACCTAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTTGAGTTCTACGGCTATGATTATGGCTATTACCCCAATTACACCTTACAGATGTGTGAAAAACTGTGCTTGGAAATATGTGGCTGCATAGGATATCAATACAGCTATAATTCGGATGTTTATAAATGTTATCCTAAGCGGCTTCTTCTTTCCTATGAAAAACCGGTTAAGGAATTCATGTTAGATTGCTCTGGCAACCGCTCAGAGCAGCTAGTAAGATCTTATGCAAAAGCCCACGAAAATGAAGTGTTAAAGTTCATCCTCTGGTTTGCGTGCGCAATTGGAGCAGTTGAGATGGTTTGCATTTGTATGGTGTGGTGTTTCTTGATGAAGGCCCAGCAAAACACCAGTACAGATCCGCCAGGCTACATTTTAGCTGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGCAGAGGAGGAGGTGGGGTTGTATACAAAGGTGTCTTATCAGACCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGACATTGCGGTGGGCACAGCAAAAGGCCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACGTTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGAAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGGTTACCGGCCGAAGGAGTGCTTCAATGGCCATCCACGAAATCCTAGACCCGTCGATGGAAGGCGAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTTTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCAGGTGGTCGAGACGCTTCTCCGCCCCGAACGTGGAAACAATCATCACTACTAA 1929 45.36 MDAPVLLLLLTLLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYDGKHTAVWMANRNQPVNGNFSKLSLLESGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGRLTLDIDGNLRLYSFEERRNNGRRCSCIPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLLLPHVEFYGYDYGYYPNYTLQMCEKLCLEICGCIGYQYSYNSDVYKCYPKRLLLSYEKPVKEFMLDCSGNRSEQLVRSYAKAHENEVLKFILWFACAIGAVEMVCICMVWCFLMKAQQNTSTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDVNYQPKVADFGLSKLQNRGEINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRRSASMAIHEILDPSMEGEYDMGEMEILVAVALQCVELDKDERPTMSQVVETLLRPERGNNHHY* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8166274 8168677 + Vvi18g705 Vvi18g705 780408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g705 642 Pfam Protein kinase domain 387 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g705 642 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 1 190 - -
Vvi18g705 642 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 584 635 - -
Vvi18g705 642 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 198 292 - -
Vvi18g705 642 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 280 582 - -
Vvi18g705 642 Gene3D - 20 148 IPR036426 -
Vvi18g705 642 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 192 IPR036426 -
Vvi18g705 642 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g705 642 Gene3D Phosphorylase Kinase; domain 1 350 458 - -
Vvi18g705 642 SMART blect_4 32 150 IPR001480 -
Vvi18g705 642 ProSiteProfiles Protein kinase domain profile. 384 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g705 642 SUPERFAMILY Protein kinase-like (PK-like) 360 631 IPR011009 -
Vvi18g705 642 Pfam D-mannose binding lectin 76 168 IPR001480 -
Vvi18g705 642 CDD PAN_AP_plant 225 292 - -
Vvi18g705 642 PANTHER OS07G0415500 PROTEIN 584 635 - -
Vvi18g705 642 PANTHER OS07G0415500 PROTEIN 1 190 - -
Vvi18g705 642 PANTHER OS07G0415500 PROTEIN 280 582 - -
Vvi18g705 642 PANTHER OS07G0415500 PROTEIN 198 292 - -
Vvi18g705 642 SMART serkin_6 384 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g705 642 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Vvi18g705 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vvi18g705 642 CDD B_lectin 34 150 IPR001480 -
Vvi18g705 642 Gene3D Transferase(Phosphotransferase) domain 1 459 641 - -
Vvi18g705 642 ProSiteProfiles PAN/Apple domain profile. 229 304 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g705 - - - vvi:100257449 1009.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g705 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76385 PF00069 Pkinase 7.30E-49 CL0016 Vvi PK