Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g708 ATGGATGCGCCAGTTCTTTTGCTTCTTCTCACTCTGCTTCTATCTTCTCCACTTCCATCGTCCACCCTCGACAGTTTGAGTCAAGGCTCATCCCTCTCAGTTGGGAAGCCTGAACAAGTTTTGATTTCACAAAGTGGAATCTTCTCAGCTGGCTTCTACCCCGTCGGTGATAATGCTTGTTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACCGCTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCCCTTCTAGAAAGTGGTGATCTTATCTTAACAGATGCTGGGCGGTTCATAGTTTGGACCATAAAGAGGGTTGGGATTTCTCCGGTGCAATTACACCTCTTCAACACTGGTAACCTTGTGCTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAACCACTCACCAGAAATACGAGACTCGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGGTTTTATAAGCTCTATTTTGACAACAATAACGTCCTCAGTCTTGTCTTCGATGGGCGGGATGCTTCAAGCATTTACTGGCCCCCATCGTGGCTTGTAAGCTGGCAGGCGGGAAGATCGGCATACAACAGCAGCAGAACTGCATTACTAGATTACTTTGGCTATTTTTCTTCAACCGACGATTTTAAGTTTCAGTCCTCGGATTTTGGTGAGAGAGTCCAAAGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGGGAGAAATAATGGAAGGAGATGCTCTTGCGTACCTGGATATGAGATGAAAAATCGCACTGACCGAACTTATGGATGCATACCAAAATTCAATCTTTCTTGCGACTCACAGAAGGTTGGTTTCCTCCCACTCCCACACGTTGAGTTCTACGGCTATGATTATGGCTATTACCTCAATTACACCTTACAGATGTGTGAAAAACTGTGCTTGAAAATATGTGGCTGCATAGGATATCAATACAGCTATAATTCGGATGTTTATAAATGTTGTCCTAAGCGGCTGTTTCTCAACGGATGCCGCTCGCCTAGTTTTGGAGGACATACATATCTAAAATTGCCTAAAGCTAGTCTTCTTTCCTATGAAAAACCACAAAACACCAGTACAGATCCGCCAGGCTACATTTTAGCTGCCACGGGATTCAGAAAATTCACCTATATTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGCAGAGGAGGGGGTGGGGTTGTATATAAAGGTGTCTTATCAGACCACCGAGTGGCAGCCATCAAGCAGCTCAGTGGAGCTAACCAAGGAGAATCTGAATTCTTGGCAGAAGTAAGTACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCGATATTGCGGTGGGCACAGCAAAAGGTCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTATACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACTCTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGGAATCAACAATTCGAGATTGTCGAGGATCAGAGGAACGAGAGGTTACATGGCTCCAGAATGGGTTTTGAACCTCCCCATCACCTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGATTACCGGCCTAAGAAGTGTTGCAAATGCCATCCACGTTGCTTCGTGGATTGAAGAAATCCTAGACCCGTCGATGGAAAGCCAATATGACATGGGTGAGATGGAAATTCTAGTAGCAGTGGCTCTGCAATGTGTGGAATTGGACAAGGATGAAAGACCCACCATGAGTCAGGTGGTCGAGACGCTTCTCCGCCCTGAACGTGGAAACAATCATCACTATTAA 2061 45.08 MDAPVLLLLLTLLLSSPLPSSTLDSLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNACCLAIWFTKPSYDGKHTAVWMANRNQPVNGNFSKLSLLESGDLILTDAGRFIVWTIKRVGISPVQLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGFYKLYFDNNNVLSLVFDGRDASSIYWPPSWLVSWQAGRSAYNSSRTALLDYFGYFSSTDDFKFQSSDFGERVQRRLTLDIDGNLRLYSFEEGRNNGRRCSCVPGYEMKNRTDRTYGCIPKFNLSCDSQKVGFLPLPHVEFYGYDYGYYLNYTLQMCEKLCLKICGCIGYQYSYNSDVYKCCPKRLFLNGCRSPSFGGHTYLKLPKASLLSYEKPQNTSTDPPGYILAATGFRKFTYIELKKATRGFSEEIGRGGGGVVYKGVLSDHRVAAIKQLSGANQGESEFLAEVSTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFDIAVGTAKGLAYLHEECLEWVIHCDVKPQNILLDSNYQPKVADFGLSKLQNRGGINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMITGLRSVANAIHVASWIEEILDPSMESQYDMGEMEILVAVALQCVELDKDERPTMSQVVETLLRPERGNNHHY* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8190898 8193301 + Vvi18g708 Vvi18g708 780411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g708 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 393 621 - -
Vvi18g708 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 272 - -
Vvi18g708 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 623 680 - -
Vvi18g708 686 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 272 393 - -
Vvi18g708 686 SUPERFAMILY Protein kinase-like (PK-like) 398 675 IPR011009 -
Vvi18g708 686 CDD PAN_AP_plant 299 382 - -
Vvi18g708 686 Gene3D Transferase(Phosphotransferase) domain 1 497 685 - -
Vvi18g708 686 Pfam Protein kinase domain 425 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g708 686 ProSiteProfiles Protein kinase domain profile. 422 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g708 686 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 193 IPR036426 -
Vvi18g708 686 Pfam D-mannose binding lectin 76 167 IPR001480 -
Vvi18g708 686 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vvi18g708 686 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 6 272 - -
Vvi18g708 686 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 393 621 - -
Vvi18g708 686 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 272 393 - -
Vvi18g708 686 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 623 680 - -
Vvi18g708 686 SMART serkin_6 422 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g708 686 Gene3D - 20 149 IPR036426 -
Vvi18g708 686 ProSitePatterns Protein kinases ATP-binding region signature. 428 450 IPR017441 GO:0005524
Vvi18g708 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Vvi18g708 686 SMART blect_4 32 150 IPR001480 -
Vvi18g708 686 Gene3D Phosphorylase Kinase; domain 1 390 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g708 - - - csin:114321139 833.558
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76387 PF00069 Pkinase 3.10E-50 CL0016 Vvi PK