Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g71 | ATGAATGTGATTTGGCTTCTGTCATTGTTGTTTCTCTGTTTTGGAGTATTGTCAAATGGGTCTCAAAAGAATCTTTCTTCAAGACCAGCTGTTGTGAATGTTGGGGCGGTATTTACATTTGAATCTACAATTGGAAGAGTTGCCAAGATTGCCATTGAGGAAGCTGTGAAAGATGTGAACTCGGATGCTGGTGTTCTCACTGGAACCAAATTTGTTTTGACGATGCGAAATTCCAATTGCAGTGGGTTTATTGGCATGATTGGAGCTTTGCAGTTTATGGAGACTGAAACCATTGCGATTATAGGGCCACAATCTTCTGTGGTAGCCCATATGATATCCCATGTTGCAAATGAACTCCAAGTTCCTCTGTTATCATTTGCAGCCACAGATCCCACTCTCTCGTCTCTTCAGTTTCCCTTTTTTGTTAGGACAACACAGAGTGATTTGTACCAAATGAAGGCAATAACTGAGCTTGTTGATTATTATGGTTGGAGGTCGGTAATTGCAATCTTCATTGATGATGATTATGGAAGGAATGGTGTGTCAGCATTAGACGATGCACTTGCGGAGAAGCGCCTTAAAATATCCCACAAGGAAGGGATTCCCCCGGGAGCTAGTGCTAGTCAAGGTGACATTATGGATATTCTTGTTAAGGTTTCAGTGTTGGAGTCTCGAATTATTGTTCTGCATGTAAATCCTGATATAGGTTTCAAAGTTTTTTCCGTGGCACGCTATCTTGGAATGATGCAGAATGGATATGTTTGGATAGCTACAGATTGGCTCTCATCTGTTTTAGATACCTCATCCCCCCTTGCATCTGATACCATGGATTCAATGCAGGGAGTTCTTGTTTTGCGTCGACATACACCAGATTCAGATAGAAAGAGGGCCTTTTTATCTAGGTGGAAGAAGTTAACTGGTGGTTCTTTGGGGCTAAATTCTTATGGGCTTTATGCCTATGATACTGTTTGGCTGCTTGCTCATGCTCTTGATGCATTTTTTAATCAGGGTGGGACTATTTCATTTTCTAATGATTCCAAGCTACTTTCTATAGGAAGGGGTAGTCGTCACCTAGAAGAAATGAATGTTTTTGATGGAGGAATGCTCCTTCTTAACAATATATTGAAGAGTAATTTTGTGGGTTTAACGGGTCCCTTTAAGTTTACTTCAGACAGGTCCCTCTATGCTCCTGCATTTGATATTATAAATGTGATTGGAACCGGGTATAGACAGATTGGTTATTGGTCTAACTATTCTGGTCTTTCAACTGAAACTCCTGAGGCACTCTACGGAAAGCCACCCAATCGTTCAAGTGTAAACCAACGGCTATATGGTGTTGTCTGGCCTGGAGAGACATTGTCAAAGCCTCGTGGATGGGTTTTCCCAAACAATGGGAAGCTATTGAAAATTGGGGTACCCAATCGGGTCAGTTACCGGGAATTTGTATCACGAGTGCGAGGCACTGATATGTTCAAGGGCTTTTGCATAGATGTGTTTACAGCTGCTGTAACCTTGTTGCCATATGCTGTTCCATTTCAATATGTTTCTGTTGGAGATGGCCATAAAAACCCGAATTACTCGGAGCTTGTGCGTATGGTTGCAGAGGGTGAGCTTGATGCTGTGGTTGGCGACATTGCCATTGTCACTAGTCGGACAAGGATTGTGGATTTTACACAGCCATATGCTTCATCTGGACTTGTTGTTGTGGCCCCATTTAGGAAGTTGAACTCTGGCGCTTGGGCTTTCCTGCGCCCATTTTCTCCACTTATGTGGGGTGTTACTGCTTGTTTCTTCATTGTTATTGGGATAGTTGTATGGATTCTGGAGCATAGGATAAATGATGAATTCAGGGGACCACCTAAACACCAAATCATAACCATTCTATGGTTTAGCTTTTCAACTATGTTTTTTGCCCATAGGGAGAGCACTGTGAGTGCTCTTGGTCGTCTGGTGCTAATTATATGGCTTTTTGTAGTTTTGATAATCAACTCAAGCTACACTGCAAGTCTAACCTCAATACTCACAGTGCAACAGCTATCTTCTCCTATTAAAGGAGTTGAAAGCTTGATAAACAGTAATGATCCAATTGGATACCAGGTGGGTTCTTTTGCAGAACATTATTTGAGTGAGGAACTCAACATATCAGAATCTAGACTTGTTGCCCTTGGATCACCAGAAGAATATGCCAAAGCCCTTCAAAATGGTCCGGGAAAAGGAGGTGTTGCTGCAGTGGTTGATGAACGACCATATGTAGAGCTCTTTCTCTCAACCCAATGCAAGTTCAGGATTGTAGGTCAAGAGTTCACTAAAAGCGGTTGGGGTTTTGTGTTTCCACGAGACTCTCCCTTAGCCGTTGACATGTCGACTGCAATTCTAGCACTATCCGAGAATGGGGATCTCCAACGAATCCATGACAAGTGGCTGGCAACAAGCGCTTGCAGTTCAGAGAGTACTGAGCTTGAATCTGACCGACTTCACCTTAAGAGCTTCTGGGGCCTCTTTCTTATATGTGGGTTAGCTTGCTTTGTTGCTCTTGTCATATACTTCTTTCAGATTCTGCGCAAGTTTCGCAATGCTGCAGCTGTGGGAGCCAATTCAACTGGTACGGGTAGCTCACGTTCAGGGCATCTCCAGACACTCTTCTCGTTAATGGATGATAGGTCAGGCCACACAAAGACTGGGCATAAGAAGAGGAGAATAGAGAGATCATTATCAGAAAATGATAAAGAAGATGAGTTGAAGAGTAACCCAAAGAAGAAGCCAATACGAAATTCCTTAGAGATCACCACCAGCACAAGTGAGTAA | 2805 | 42.78 | MNVIWLLSLLFLCFGVLSNGSQKNLSSRPAVVNVGAVFTFESTIGRVAKIAIEEAVKDVNSDAGVLTGTKFVLTMRNSNCSGFIGMIGALQFMETETIAIIGPQSSVVAHMISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAITELVDYYGWRSVIAIFIDDDYGRNGVSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGFKVFSVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRAFLSRWKKLTGGSLGLNSYGLYAYDTVWLLAHALDAFFNQGGTISFSNDSKLLSIGRGSRHLEEMNVFDGGMLLLNNILKSNFVGLTGPFKFTSDRSLYAPAFDIINVIGTGYRQIGYWSNYSGLSTETPEALYGKPPNRSSVNQRLYGVVWPGETLSKPRGWVFPNNGKLLKIGVPNRVSYREFVSRVRGTDMFKGFCIDVFTAAVTLLPYAVPFQYVSVGDGHKNPNYSELVRMVAEGELDAVVGDIAIVTSRTRIVDFTQPYASSGLVVVAPFRKLNSGAWAFLRPFSPLMWGVTACFFIVIGIVVWILEHRINDEFRGPPKHQIITILWFSFSTMFFAHRESTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGVESLINSNDPIGYQVGSFAEHYLSEELNISESRLVALGSPEEYAKALQNGPGKGGVAAVVDERPYVELFLSTQCKFRIVGQEFTKSGWGFVFPRDSPLAVDMSTAILALSENGDLQRIHDKWLATSACSSESTELESDRLHLKSFWGLFLICGLACFVALVIYFFQILRKFRNAAAVGANSTGTGSSRSGHLQTLFSLMDDRSGHTKTGHKKRRIERSLSENDKEDELKSNPKKKPIRNSLEITTSTSE* | 935 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 696906 | 703692 | - | Vvi18g71 | Vvi18g71 | 779774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g71 | 934 | CDD | GluR_Plant | 466 | 808 | - | - | |
Vvi18g71 | 934 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 490 | 808 | IPR001638 | - | |
Vvi18g71 | 934 | SUPERFAMILY | Periplasmic binding protein-like I | 27 | 460 | IPR028082 | - | |
Vvi18g71 | 934 | Pfam | Receptor family ligand binding region | 50 | 406 | IPR001828 | - | |
Vvi18g71 | 934 | SMART | GluR_14 | 469 | 810 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi18g71 | 934 | Gene3D | - | 147 | 421 | - | - | |
Vvi18g71 | 934 | Gene3D | - | 50 | 396 | - | - | |
Vvi18g71 | 934 | CDD | PBP1_GABAb_receptor_plant | 33 | 422 | IPR044440 | - | |
Vvi18g71 | 934 | Pfam | Ligand-gated ion channel | 809 | 841 | IPR001320 | GO:0015276|GO:0016020 | |
Vvi18g71 | 934 | PIRSF | IGluLR_plant | 1 | 934 | IPR017103 | - | |
Vvi18g71 | 934 | PANTHER | GLUTAMATE RECEPTOR 3.3 | 12 | 923 | - | - | |
Vvi18g71 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 100 | 126 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Vvi18g71 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 132 | 151 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Vvi18g71 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 151 | 167 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Vvi18g71 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 167 | 184 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Vvi18g71 | 934 | MobiDBLite | consensus disorder prediction | 886 | 934 | - | - | |
Vvi18g71 | 934 | Gene3D | - | 578 | 714 | - | - | |
Vvi18g71 | 934 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 12 | 923 | - | - | |
Vvi18g71 | 934 | MobiDBLite | consensus disorder prediction | 899 | 921 | - | - | |
Vvi18g71 | 934 | SUPERFAMILY | Periplasmic binding protein-like II | 445 | 809 | - | - | |
Vvi18g71 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 45 | 61 | - | - | |
Vvi18g71 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 105 | 133 | - | - | |
Vvi18g71 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 319 | 331 | - | - | |
Vvi18g71 | 934 | Gene3D | - | 468 | 577 | - | - | |
Vvi18g71 | 934 | Gene3D | - | 756 | 815 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g71 | K05387 | - | vvi:100258104 | 1838.16 |