Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g71 ATGAATGTGATTTGGCTTCTGTCATTGTTGTTTCTCTGTTTTGGAGTATTGTCAAATGGGTCTCAAAAGAATCTTTCTTCAAGACCAGCTGTTGTGAATGTTGGGGCGGTATTTACATTTGAATCTACAATTGGAAGAGTTGCCAAGATTGCCATTGAGGAAGCTGTGAAAGATGTGAACTCGGATGCTGGTGTTCTCACTGGAACCAAATTTGTTTTGACGATGCGAAATTCCAATTGCAGTGGGTTTATTGGCATGATTGGAGCTTTGCAGTTTATGGAGACTGAAACCATTGCGATTATAGGGCCACAATCTTCTGTGGTAGCCCATATGATATCCCATGTTGCAAATGAACTCCAAGTTCCTCTGTTATCATTTGCAGCCACAGATCCCACTCTCTCGTCTCTTCAGTTTCCCTTTTTTGTTAGGACAACACAGAGTGATTTGTACCAAATGAAGGCAATAACTGAGCTTGTTGATTATTATGGTTGGAGGTCGGTAATTGCAATCTTCATTGATGATGATTATGGAAGGAATGGTGTGTCAGCATTAGACGATGCACTTGCGGAGAAGCGCCTTAAAATATCCCACAAGGAAGGGATTCCCCCGGGAGCTAGTGCTAGTCAAGGTGACATTATGGATATTCTTGTTAAGGTTTCAGTGTTGGAGTCTCGAATTATTGTTCTGCATGTAAATCCTGATATAGGTTTCAAAGTTTTTTCCGTGGCACGCTATCTTGGAATGATGCAGAATGGATATGTTTGGATAGCTACAGATTGGCTCTCATCTGTTTTAGATACCTCATCCCCCCTTGCATCTGATACCATGGATTCAATGCAGGGAGTTCTTGTTTTGCGTCGACATACACCAGATTCAGATAGAAAGAGGGCCTTTTTATCTAGGTGGAAGAAGTTAACTGGTGGTTCTTTGGGGCTAAATTCTTATGGGCTTTATGCCTATGATACTGTTTGGCTGCTTGCTCATGCTCTTGATGCATTTTTTAATCAGGGTGGGACTATTTCATTTTCTAATGATTCCAAGCTACTTTCTATAGGAAGGGGTAGTCGTCACCTAGAAGAAATGAATGTTTTTGATGGAGGAATGCTCCTTCTTAACAATATATTGAAGAGTAATTTTGTGGGTTTAACGGGTCCCTTTAAGTTTACTTCAGACAGGTCCCTCTATGCTCCTGCATTTGATATTATAAATGTGATTGGAACCGGGTATAGACAGATTGGTTATTGGTCTAACTATTCTGGTCTTTCAACTGAAACTCCTGAGGCACTCTACGGAAAGCCACCCAATCGTTCAAGTGTAAACCAACGGCTATATGGTGTTGTCTGGCCTGGAGAGACATTGTCAAAGCCTCGTGGATGGGTTTTCCCAAACAATGGGAAGCTATTGAAAATTGGGGTACCCAATCGGGTCAGTTACCGGGAATTTGTATCACGAGTGCGAGGCACTGATATGTTCAAGGGCTTTTGCATAGATGTGTTTACAGCTGCTGTAACCTTGTTGCCATATGCTGTTCCATTTCAATATGTTTCTGTTGGAGATGGCCATAAAAACCCGAATTACTCGGAGCTTGTGCGTATGGTTGCAGAGGGTGAGCTTGATGCTGTGGTTGGCGACATTGCCATTGTCACTAGTCGGACAAGGATTGTGGATTTTACACAGCCATATGCTTCATCTGGACTTGTTGTTGTGGCCCCATTTAGGAAGTTGAACTCTGGCGCTTGGGCTTTCCTGCGCCCATTTTCTCCACTTATGTGGGGTGTTACTGCTTGTTTCTTCATTGTTATTGGGATAGTTGTATGGATTCTGGAGCATAGGATAAATGATGAATTCAGGGGACCACCTAAACACCAAATCATAACCATTCTATGGTTTAGCTTTTCAACTATGTTTTTTGCCCATAGGGAGAGCACTGTGAGTGCTCTTGGTCGTCTGGTGCTAATTATATGGCTTTTTGTAGTTTTGATAATCAACTCAAGCTACACTGCAAGTCTAACCTCAATACTCACAGTGCAACAGCTATCTTCTCCTATTAAAGGAGTTGAAAGCTTGATAAACAGTAATGATCCAATTGGATACCAGGTGGGTTCTTTTGCAGAACATTATTTGAGTGAGGAACTCAACATATCAGAATCTAGACTTGTTGCCCTTGGATCACCAGAAGAATATGCCAAAGCCCTTCAAAATGGTCCGGGAAAAGGAGGTGTTGCTGCAGTGGTTGATGAACGACCATATGTAGAGCTCTTTCTCTCAACCCAATGCAAGTTCAGGATTGTAGGTCAAGAGTTCACTAAAAGCGGTTGGGGTTTTGTGTTTCCACGAGACTCTCCCTTAGCCGTTGACATGTCGACTGCAATTCTAGCACTATCCGAGAATGGGGATCTCCAACGAATCCATGACAAGTGGCTGGCAACAAGCGCTTGCAGTTCAGAGAGTACTGAGCTTGAATCTGACCGACTTCACCTTAAGAGCTTCTGGGGCCTCTTTCTTATATGTGGGTTAGCTTGCTTTGTTGCTCTTGTCATATACTTCTTTCAGATTCTGCGCAAGTTTCGCAATGCTGCAGCTGTGGGAGCCAATTCAACTGGTACGGGTAGCTCACGTTCAGGGCATCTCCAGACACTCTTCTCGTTAATGGATGATAGGTCAGGCCACACAAAGACTGGGCATAAGAAGAGGAGAATAGAGAGATCATTATCAGAAAATGATAAAGAAGATGAGTTGAAGAGTAACCCAAAGAAGAAGCCAATACGAAATTCCTTAGAGATCACCACCAGCACAAGTGAGTAA 2805 42.78 MNVIWLLSLLFLCFGVLSNGSQKNLSSRPAVVNVGAVFTFESTIGRVAKIAIEEAVKDVNSDAGVLTGTKFVLTMRNSNCSGFIGMIGALQFMETETIAIIGPQSSVVAHMISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAITELVDYYGWRSVIAIFIDDDYGRNGVSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGFKVFSVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRAFLSRWKKLTGGSLGLNSYGLYAYDTVWLLAHALDAFFNQGGTISFSNDSKLLSIGRGSRHLEEMNVFDGGMLLLNNILKSNFVGLTGPFKFTSDRSLYAPAFDIINVIGTGYRQIGYWSNYSGLSTETPEALYGKPPNRSSVNQRLYGVVWPGETLSKPRGWVFPNNGKLLKIGVPNRVSYREFVSRVRGTDMFKGFCIDVFTAAVTLLPYAVPFQYVSVGDGHKNPNYSELVRMVAEGELDAVVGDIAIVTSRTRIVDFTQPYASSGLVVVAPFRKLNSGAWAFLRPFSPLMWGVTACFFIVIGIVVWILEHRINDEFRGPPKHQIITILWFSFSTMFFAHRESTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGVESLINSNDPIGYQVGSFAEHYLSEELNISESRLVALGSPEEYAKALQNGPGKGGVAAVVDERPYVELFLSTQCKFRIVGQEFTKSGWGFVFPRDSPLAVDMSTAILALSENGDLQRIHDKWLATSACSSESTELESDRLHLKSFWGLFLICGLACFVALVIYFFQILRKFRNAAAVGANSTGTGSSRSGHLQTLFSLMDDRSGHTKTGHKKRRIERSLSENDKEDELKSNPKKKPIRNSLEITTSTSE* 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 696906 703692 - Vvi18g71 Vvi18g71 779774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g71 934 CDD GluR_Plant 466 808 - -
Vvi18g71 934 Pfam Bacterial extracellular solute-binding proteins, family 3 490 808 IPR001638 -
Vvi18g71 934 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Vvi18g71 934 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Vvi18g71 934 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Vvi18g71 934 Gene3D - 147 421 - -
Vvi18g71 934 Gene3D - 50 396 - -
Vvi18g71 934 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Vvi18g71 934 Pfam Ligand-gated ion channel 809 841 IPR001320 GO:0015276|GO:0016020
Vvi18g71 934 PIRSF IGluLR_plant 1 934 IPR017103 -
Vvi18g71 934 PANTHER GLUTAMATE RECEPTOR 3.3 12 923 - -
Vvi18g71 934 PRINTS Metabotropic glutamate GPCR signature 100 126 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi18g71 934 PRINTS Metabotropic glutamate GPCR signature 132 151 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi18g71 934 PRINTS Metabotropic glutamate GPCR signature 151 167 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi18g71 934 PRINTS Metabotropic glutamate GPCR signature 167 184 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi18g71 934 MobiDBLite consensus disorder prediction 886 934 - -
Vvi18g71 934 Gene3D - 578 714 - -
Vvi18g71 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 923 - -
Vvi18g71 934 MobiDBLite consensus disorder prediction 899 921 - -
Vvi18g71 934 SUPERFAMILY Periplasmic binding protein-like II 445 809 - -
Vvi18g71 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Vvi18g71 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Vvi18g71 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 319 331 - -
Vvi18g71 934 Gene3D - 468 577 - -
Vvi18g71 934 Gene3D - 756 815 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1211 Vvi18g71 ECH
Vvi3g300 Vvi18g71 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g71 K05387 - vvi:100258104 1838.16