Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g711 ATGAGTAGAAAATGCATACAGAAGCGAAAAACACTTTTCATTTTTGCATTTGCTTTCTCTATAAAGGTGAGGGGCCGATTCTTAGATCAATCAGATTTCATACCCTTGCATTGGTGCACAGTATCTAAATGGATGTCTTGCTCTTCCTCACGTTTCTATCATCTCCAACGAAAAATCAACGAAATCTCGATGATAAGTTGGGACGTGTGGCAACTTTGGGTGATCGGTGGTAAAAAAAAATTTTTGAGTCAAGGCTCATCCCTATCAGTTGGGAAGCCTGAACAAGTTTTAATTTCACAAAGTGGAATCTTTTCAGCCGGCTTCTACCCCGTCGGTGACAATGCTTATTGTCTTGCCATATGGTTCACCAAACCATCCTACGACGGCAAACATACGGTTGTTTGGATGGCAAACCGAAACCAACCAGTTAATGGGAATTTCTCAAAGCTTTCCCTGCTAAAAAATGGTGAACTTATCTTAACAGATGCCGGGCGGTTCATAGTTTGGACCACAAAGGCGGTTGGGGTTTCTCCGGTGCGATTACATCTCTTCAACACTGGTAACCTTGTGTTGCGTACCTCGGATGGTGTTATTCAATGGCAAAGTTTCGATTCACCAACAGATACCCTTCTCCCTCACCAGCCACTCACCAGAAATACGAGACTTGTCTCTTCAAGAACCAAAACCAACTTTTTCTCAGGGTTTTATAAGCTCTATTTTGACAACAGTAACGTCCTCAGTCTTGTGTTCGATGGGCCAAACGTTTCAAGCGTTTACTGGCCCCCATCGTGGCTTCTTCAGTCCTCGGATTTTGGTGAGAGAGTCCGGCGAAGATTGACCCTGGATATTGATGGCAACTTACGATTATACAGTTTTGAGGAAGAGAGAAATAAGTGGGTTGTTACTGGGGAAGCCATCACGGAACAATGCAAAGTTCATGGAATATGCGGACCCAACAGTGTTTGTACCTATGTGCCCGGTTCTGGGAGTGGAAGGAGATGCTCTTGCATACCTGGATATGAGGTGAAAAATCGCACTGACCGAACTTATGGATGCATACAAAAATTCAATCTTTCTTGCAACTCACAGAAGGTTGGTTTCCTCCTACTCCCACACGTGGAGTTCTACGGCTATGATTATGACTGTTACCCCAATTACACCTTACAGATGTGTAAAAAACTGTGCTTGGAAAAATGCGGTTGCATAGGATTTCAATACAAGTACGATCATATATGTTATCCTAAGCGGATTCTCCTTTCCTATGACAAACCCGTTGAGGAATTCATGTTAGATTGCTCGGAAAACCGCACAGAGCAGCTAATGATTTGCATCTGTGTGGTGTGTTGTTTCTTGATGATGAAGGCCCAGCAAAACACCAATACAGATCCGCCAGGCTACATTTTAGCCGCCACGGGATTCAGAAAATTCACCTATACTGAGCTGAAGAAAGCAACACGGGGTTTCAGTGAGGAGATTGGAAGAGGAGGAGGTGGGATTGTATATAAAGGTGTCTTGTCAGACCACCGAGTAGCAGCCATCAAGCAGCTCAATGGAGCTAACCAAGGAGAAGCTGAATTTTTGGCAGAAGCAAGCACCATTGGGAGGCTTAACCACATGAACTTGATAGAGATGTGGGGTTATTGCTTTGAGGGGAAGCACAGGCTCTTGGTTTATGAATACATGGAGCATGGATCACTAGCACAAAACCTCACTTCCAATACACTTGATTGGCAGAAGAGGTTCAATATTGCGGTGGGCACAGCAAAAGGTCTGGCTTATTTACACGAAGAGTGCTTGGAGTGGGTTCTACACTGCGATGTGAAGCCTCAAAACATACTCCTAGACTCTAATTATCAGCCAAAGGTGGCAGACTTCGGCCTGTCAAAGTTACAGAACAGAGGAGGAATCAACAATTCAAGATTGTCGAGGATCAGAGGAACGAGAGGTTACATGGCTCCAGAGTGGGTTTTGAACCTCCCCATCACGTCCAAAGTAGACGTTTATAGCTATGGTATTGTGGTTCTGGAGATGATTACCGGTCTAAGAATTGCTTCGTGGATTGAAGAAATCCTAGACCCGTCGATGGAAAGCAAATATGACATGGGTGAGATGGAAATTCTAGTATCAGTGGCTCTGCAATGTGTGGAATTGGATAAAGATGAAAGACCCACCATGAGTCAGGTGGTCGAGCTGCTTCTCCGCCGTGGATGTTGA 2214 44.49 MSRKCIQKRKTLFIFAFAFSIKVRGRFLDQSDFIPLHWCTVSKWMSCSSSRFYHLQRKINEISMISWDVWQLWVIGGKKKFLSQGSSLSVGKPEQVLISQSGIFSAGFYPVGDNAYCLAIWFTKPSYDGKHTVVWMANRNQPVNGNFSKLSLLKNGELILTDAGRFIVWTTKAVGVSPVRLHLFNTGNLVLRTSDGVIQWQSFDSPTDTLLPHQPLTRNTRLVSSRTKTNFFSGFYKLYFDNSNVLSLVFDGPNVSSVYWPPSWLLQSSDFGERVRRRLTLDIDGNLRLYSFEEERNKWVVTGEAITEQCKVHGICGPNSVCTYVPGSGSGRRCSCIPGYEVKNRTDRTYGCIQKFNLSCNSQKVGFLLLPHVEFYGYDYDCYPNYTLQMCKKLCLEKCGCIGFQYKYDHICYPKRILLSYDKPVEEFMLDCSENRTEQLMICICVVCCFLMMKAQQNTNTDPPGYILAATGFRKFTYTELKKATRGFSEEIGRGGGGIVYKGVLSDHRVAAIKQLNGANQGEAEFLAEASTIGRLNHMNLIEMWGYCFEGKHRLLVYEYMEHGSLAQNLTSNTLDWQKRFNIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVADFGLSKLQNRGGINNSRLSRIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMITGLRIASWIEEILDPSMESKYDMGEMEILVSVALQCVELDKDERPTMSQVVELLLRRGC* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8205966 8217973 + Vvi18g711 Vvi18g711 780414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g711 737 SUPERFAMILY Protein kinase-like (PK-like) 462 732 IPR011009 -
Vvi18g711 737 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 79 267 - -
Vvi18g711 737 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 444 681 - -
Vvi18g711 737 Gene3D - 76 205 IPR036426 -
Vvi18g711 737 SMART blect_4 88 206 IPR001480 -
Vvi18g711 737 SMART serkin_6 486 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g711 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Vvi18g711 737 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 684 734 - -
Vvi18g711 737 CDD B_lectin 92 206 IPR001480 -
Vvi18g711 737 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 265 420 - -
Vvi18g711 737 ProSiteProfiles Bulb-type lectin domain profile. 79 204 IPR001480 -
Vvi18g711 737 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 79 267 - -
Vvi18g711 737 ProSiteProfiles PAN/Apple domain profile. 360 432 IPR003609 -
Vvi18g711 737 Pfam Protein kinase domain 489 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g711 737 Pfam D-mannose binding lectin 132 223 IPR001480 -
Vvi18g711 737 Gene3D Transferase(Phosphotransferase) domain 1 561 735 - -
Vvi18g711 737 Pfam S-locus glycoprotein domain 274 343 IPR000858 GO:0048544
Vvi18g711 737 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 265 420 - -
Vvi18g711 737 SUPERFAMILY alpha-D-mannose-specific plant lectins 115 249 IPR036426 -
Vvi18g711 737 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 444 681 - -
Vvi18g711 737 PIRSF SRK 71 272 IPR024171 GO:0004674
Vvi18g711 737 PIRSF SRK 263 442 IPR024171 GO:0004674
Vvi18g711 737 PIRSF SRK 437 735 IPR024171 GO:0004674
Vvi18g711 737 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 684 734 - -
Vvi18g711 737 Gene3D Phosphorylase Kinase; domain 1 451 560 - -
Vvi18g711 737 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Vvi18g711 737 ProSiteProfiles Protein kinase domain profile. 486 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g711 - - - vvi:100260797 1275.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76390 PF00069 Pkinase 3.10E-48 CL0016 Vvi PK