Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g712 ATGTTTTTAGAAACCAAACACGATGGCGCAAGCAAAACTTGGCCCGAGGGGCAATGTAAATTTTCCCCGTTCACCCAGTCAAGGAGTCATGATGTAAACATTTATTTTCTAAACTCTGGTAGCACCATACACTTGCATTCTCCATTGCAAATATCTGATCAGGAAACAGAGCACATAAACCATATCCCAAAACTCATGGATAGGACAGTTGGTTTCTTTGTTTTGGCTTTGCTATTAACTTTCTATCCATCTTCATCTGAAACGTATGATACTCTGAGCGAAGGCTCATCTCTTTCCGTGGAGAAATCAAATGATGTTCTCATTTCAGCAAATGGTATATTCTCTGCTGGGTTTTATCAGGTCGGCAACAACAGTTACAACACTTTCTGCTTCGCCATATGGTTCACAAAATCATGGGGTGCAACCACAGTTTGGATGGCGAACCGTGACCAACCGGTCAACGGTAGAGGCTCCAAGCTTTCTTTGTTGAGGAATGGCAATCTCCTCTTAACTGATGCTGGCAAAATCATGGTTTGGATGACCAACACCGTTTCAACCTCGTATGTGAGATTACAGCTCCTTAACACCGGCAATCTTGTTCTATATGCTTGGGAGAAGACGGTGATTTGGCAGAGCTTTGACTCACCCACAGATACCCTTCTTCCTCACCAGATACTGACAAAAGATACCAGCCTTATCTCATCAAGAAGCCAAAGCAACTATTCTTCTGGTTTTTATAAGCTATTTTTTGACATTGATAACGTCATCCGCCTTCTCTTCAATGGTCCTGTGGTTTCCAGCCTCTACTGGCCAGACCCAAGCCGGGTGACCTGGGAGGCTGCGAGGAGCACATACAACAACAGTCGAATCGCAAGAAGATTGACCCTCGATTTCGATGGCAATCTTAGAATATATGATCCCCTTGAAGAATTCACCATAAATTGTTCAGGCAACACTCGTTATATACAGCTAGATACAACATTGAAGTTTTTGAAGTTTTTGCTATGGTTTGCCTATGGACTGGGAGTTCTAGAGACGGCAATTGTCTTGCTGGTATGGCTTTTCCTATTTAGGGCCACGCGAGGTTTCACCCAAGAGATTGGAAGAGGAGGTGGAGGAATGGTATATAAAGGTGTATTGCTTGATCAGGGGAAGCACCGGCTGTTGGTGTATGAGTACATGGAACATGGATCCTTGGCACAAAAGCTATCGTCCAATACTCTTGATTGGGAGAAGAGGTTCCAAATAGCGCTTGGCACGGCCAGAGGCCTAGCTTATTTACACGAAGAATGCTTGGAAGGAACCAGAGGATACATGGCTCCTGAATGGGTATTCAACCTTCCCATAACCTCCAAGGTAGACGTTTATGGCTATGGAATCGTGGTTTTGGAGATGGATTGGTCATTAGATAGAGAAGTTGCAGGAGGCGAGTCATGGGTAGCAAGGATGAAGGAAGTTTACCGGTCTTTGGAAGATTGGAGGAGCACTTTCAGGTTAGGGCATGTTGATTTTGAATGCAACCATGCCCTCAAGATCCAACCAAATTACACCAAGGCTCTTCTTCATAGAGCTGTCTCAAATGGGAAGCTTGGACGATGGGCAGATGTAGTAAAAGATTATGAGGTCTTGAGAAGGGAACTTCCTGGAGACGTCGAGGTTGTTGAATCTCTATCACAGGCACAAGCTGCATTGTCAAAATCATGGGAGGATGAAACTCATAGTGTGAAGTTTGGTGGTGAAGTGGAGGAGAGCCCAACAGTAGCAAAAACTGAGAGCATAAAAAGTGTTCCAACCTTCAAGATTTACAAGAACGGGGATAAGGTCAATGAGATGATTTGTTCCGACCTTCAAAATTTATTTTAA 1863 43.96 MFLETKHDGASKTWPEGQCKFSPFTQSRSHDVNIYFLNSGSTIHLHSPLQISDQETEHINHIPKLMDRTVGFFVLALLLTFYPSSSETYDTLSEGSSLSVEKSNDVLISANGIFSAGFYQVGNNSYNTFCFAIWFTKSWGATTVWMANRDQPVNGRGSKLSLLRNGNLLLTDAGKIMVWMTNTVSTSYVRLQLLNTGNLVLYAWEKTVIWQSFDSPTDTLLPHQILTKDTSLISSRSQSNYSSGFYKLFFDIDNVIRLLFNGPVVSSLYWPDPSRVTWEAARSTYNNSRIARRLTLDFDGNLRIYDPLEEFTINCSGNTRYIQLDTTLKFLKFLLWFAYGLGVLETAIVLLVWLFLFRATRGFTQEIGRGGGGMVYKGVLLDQGKHRLLVYEYMEHGSLAQKLSSNTLDWEKRFQIALGTARGLAYLHEECLEGTRGYMAPEWVFNLPITSKVDVYGYGIVVLEMDWSLDREVAGGESWVARMKEVYRSLEDWRSTFRLGHVDFECNHALKIQPNYTKALLHRAVSNGKLGRWADVVKDYEVLRRELPGDVEVVESLSQAQAALSKSWEDETHSVKFGGEVEESPTVAKTESIKSVPTFKIYKNGDKVNEMICSDLQNLF* 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8220837 8227069 - Vvi18g712 Vvi18g712 780415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g712 620 PANTHER OS07G0415500 PROTEIN 383 433 - -
Vvi18g712 620 PANTHER OS07G0415500 PROTEIN 309 360 - -
Vvi18g712 620 PANTHER OS07G0415500 PROTEIN 72 291 - -
Vvi18g712 620 PANTHER OS07G0415500 PROTEIN 433 465 - -
Vvi18g712 620 PANTHER OS07G0415500 PROTEIN 358 383 - -
Vvi18g712 620 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 433 465 - -
Vvi18g712 620 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 309 360 - -
Vvi18g712 620 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 383 433 - -
Vvi18g712 620 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 72 291 - -
Vvi18g712 620 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 358 383 - -
Vvi18g712 620 SMART blect_4 98 216 IPR001480 -
Vvi18g712 620 CDD TRX_family 580 615 - -
Vvi18g712 620 Gene3D Transferase(Phosphotransferase) domain 1 436 485 - -
Vvi18g712 620 Gene3D - 84 215 IPR036426 -
Vvi18g712 620 Gene3D Transferase(Phosphotransferase) domain 1 381 435 - -
Vvi18g712 620 SUPERFAMILY Protein kinase-like (PK-like) 364 467 IPR011009 -
Vvi18g712 620 CDD B_lectin 102 216 IPR001480 -
Vvi18g712 620 Pfam Protein tyrosine and serine/threonine kinase 377 430 IPR001245 GO:0004672|GO:0006468
Vvi18g712 620 SUPERFAMILY alpha-D-mannose-specific plant lectins 129 272 IPR036426 -
Vvi18g712 620 SMART serkin_6 361 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g712 620 ProSiteProfiles Bulb-type lectin domain profile. 83 214 IPR001480 -
Vvi18g712 620 Gene3D Tetratricopeptide repeat domain 486 569 IPR011990 GO:0005515
Vvi18g712 620 SUPERFAMILY TPR-like 504 570 IPR011990 GO:0005515
Vvi18g712 620 Pfam D-mannose binding lectin 142 230 IPR001480 -
Vvi18g712 620 SUPERFAMILY Thioredoxin-like 580 613 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g712 - - - vvi:100243693 463.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g712 . Blo12g00974 . . Bpe02g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76391 PF01453 B_lectin 1.40E-22 No_clan Vvi PK