Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g717 ATGATGGAAGCAAAGCCCACGGTCCTCGTCGCAGAGAAGCTCGGAGAAGCGGGTCTCGAACTCCTCAAGGGCTTCGCCAACGTTGACTGCTCTTATAATATGAGCCCCGAGGAGCTTTGTACCAAGATCTCACTGTGCGACGCCTTAATCGTCAGGAGCGGCACTAAGGTTACTCGTGAGGTGTTCGAGTCCGCCGGCCGTCGCCTCAAGGTTGTCGGACGGGCTGGCGTTGGTATTGATAACGTTGACCTTTCGGCCGCCACGGAGCATGGATGTCTTGTTGTTAATGCCCCAACAGCTAATACTATTGCGGCTGCTGAGCATGGGGTTGCTCTTCTAACTGCTATGGCGCGTAACATCGCCCAAGCGGACGCTTCTGTCAAAGCCGGGAAGTGGGAAAGGAGTAAGTATGTAGGTGTGTCACTTGTTGGAAAAACCCTTGCTGTGATGGGATTTGGAAAGGTTGGATCAGAAGTTGCTCGGCGAGCTAAGGGGCTTGGCATGCATGTGATTGCACATGATCCATATGCCCCAGCAGACAGAGCCCGGGCAATTGGTGTGAATTTAGTGACCTTTGAAGAAGCCATATCAACTGCAGATTTTATTTCATTGCACATGCCTCTCACTCCTGCTACATCCAAGATTCTCAATGATGAGTCCTTTTCAAGGATGAAGAAAGGAGTTCGGATAGTCAATGTCGCTCGTGGTGGTGTGATTGATGAGGAAGCTCTAATAAGGGCCTTGGATTCAGGGATTGTCGCTCAGGCAGCGCTTGATGTGTTCACTGAAGAACCTCCACCAAAAGATAGTAAGTTGGTGCAGCATGAAAATGTGACTGTTACTCCACATCTTGGTGCCAGCACAACGGAGGCACAGGAAGGAGTGGCCATTGAAATAGCTGAAGCTGTTGTTGGGGCTCTAAAAGGGGAGCTTGCTGCTACTGCAGTAAATGCACCCATGGTTCCTGCTGAGGTTTTATCCGCACTTGCGCCATTTGTTGTTCTGGCAGAGAAGCTTGGCCGCCTGGCTGTGCAACTGGTTGCAGGTGGAAGTGGTGTGAGATCAGTGAAGGTGACATATGCCTCTTCCCGGGGTCCAGATGATCTTGACACTCGCTTGTTGCGTGCTATGGTCACCAAGGGTCTAATTGAGCCTATTTCCAGCGTTTTTGTGAACTTGGTGAATGCTGACTTCACTGCCAAGCAGAGAGGACTGAGGATAACAGAAGAAAGAGTACAAATTGCTAACGTGGAGTCGAAATTTGCCAGTGCTATCTCGGAGTCTGGTGAGATTAAAGTGGAAGGAAGGGTGAAAGATGGGAAACCTCATCTGACCAAAGTTGGATCATTTGGGGTGGATGTGAGTCTGGAAGGGAGCCTCATTCTGTTGAGGCATGTTGATCAACCTGGTATAATTGGAAAGGTGGGAAGCATCCTGGGTGAGGAGAACGTCAATGTGAGTTTCATGAGTGTTGGGAGGACTGCACCACGAAAACAGGCTGTAATGACAATTGGTGTAGATGAGGAGCCCAGCAGGGAAGCATTAACAAGAATTGGGAATCTACCAGCCATTGAAGAGTTTGTTTTCCTCGAGTTGTAG 1599 49.78 MMEAKPTVLVAEKLGEAGLELLKGFANVDCSYNMSPEELCTKISLCDALIVRSGTKVTREVFESAGRRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGVALLTAMARNIAQADASVKAGKWERSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVNLVTFEEAISTADFISLHMPLTPATSKILNDESFSRMKKGVRIVNVARGGVIDEEALIRALDSGIVAQAALDVFTEEPPPKDSKLVQHENVTVTPHLGASTTEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSALAPFVVLAEKLGRLAVQLVAGGSGVRSVKVTYASSRGPDDLDTRLLRAMVTKGLIEPISSVFVNLVNADFTAKQRGLRITEERVQIANVESKFASAISESGEIKVEGRVKDGKPHLTKVGSFGVDVSLEGSLILLRHVDQPGIIGKVGSILGEENVNVSFMSVGRTAPRKQAVMTIGVDEEPSREALTRIGNLPAIEEFVFLEL* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8271908 8274887 + Vvi18g717 Vvi18g717 780420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g717 532 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 IPR029753 -
Vvi18g717 532 SUPERFAMILY Serine metabolism enzymes domain 323 454 IPR029009 -
Vvi18g717 532 CDD PGDH_4 8 310 - -
Vvi18g717 532 Gene3D - 101 283 - -
Vvi18g717 532 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 329 445 IPR045626 -
Vvi18g717 532 Gene3D - 321 458 IPR029009 -
Vvi18g717 532 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 317 IPR006139 GO:0016616|GO:0051287
Vvi18g717 532 CDD ACT_3PGDH-xct 460 532 - -
Vvi18g717 532 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 IPR029753 -
Vvi18g717 532 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 285 IPR006140 GO:0051287
Vvi18g717 532 ProSiteProfiles ACT domain profile. 460 532 IPR002912 -
Vvi18g717 532 SUPERFAMILY ACT-like 450 527 IPR045865 -
Vvi18g717 532 SMART AdoHcyase_NAD_2 135 289 IPR015878 -
Vvi18g717 532 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 IPR029752 -
Vvi18g717 532 Gene3D - 10 310 - -
Vvi18g717 532 Gene3D - 459 532 - -
Vvi18g717 532 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 1 527 - -
Vvi18g717 532 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 104 286 IPR036291 -
Vvi18g717 532 Pfam ACT domain 461 522 IPR002912 -
Vvi18g717 532 PANTHER FORMATE DEHYDROGENASE 1 1 527 - -
Vvi18g717 532 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 5 134 - -
Vvi18g717 532 TIGRFAM PGDH: phosphoglycerate dehydrogenase 8 531 IPR006236 GO:0004617|GO:0006564
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g717 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - vvi:100259056 975.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g618 Vvi18g717 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78