Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g72 ATGGAAGATGAAAATTCAAATAATTCAGATAATTTGAAGCAACTCACAAATGGAAAGCCTCCGCGACACCTCTCAGTTATGCGGCATTGCATAAGCTCTGCTAGGCTGCTCGCTGCTACTGATTTTGAATTAGGTACTGGGATGATTGTTAAGTCCCCTCCAGATGGAAAATCAGGGTTTTTACCTGTGTTTCGATCAGGAAGCTGTGCTGAGAGAGGACCTAAACAGTACATGGAGGACGAGCACATATGTATAGATAATCTTATTGAACATCTAGGTGCAACTGCAGACTTTCCTTGCCCTGGAGCTTTCTATGGGGTGTTTGATGGCCATGGTGGCACAGATGCAGCATCATTTGTCAGAAAGAACATCCTCAAGTTCATGGTTGAGGATTCCCATTTTCCACTTTGTGTGCAAAAAGCTATTAAGAGTGCTTTTGTGAAAGCTGATCATGCATTTGCTGATGCCAGTTCTCTTGACATCTCCTCTGGCACCACTGCTCTAACTGCCTTTATTTTTGGAAGGACAATGCTAATTGCCAATGCTGGAGATTGTCGGGCTGTGCTAGGGAAACGAGGTAGAGCACTCGAGCTGTCCAGAGACCACAAACCCAACTGCCCATCTGAAAGATTAAGGATTGAGAAGCTTGGCGGAGTTGTCTATGATGGCTATCTCAATGGCCAACTATCTGTGGCACGTGCACTTGGGGATTGGCACATGAAGGTGCCCAAAGGCTCTGCCTGCCCCTTAAGCGCAGAGCCAGAGTTGCAGGAGACCCTCCTAACTGAGGACGATGAGTTCCTGATAATGGGCTGTGACGGCCTATGGGATGTAATGAGCAGCCAGTGTGCTGTGACGATGGCAAGGAAAGAACTAATGCTCCACAACGATCCTGAGAGATGTTCAAAAGAGTTGGTTAGGGAGGCACTGAAGCGCGACACCTGTGATAATCTAACGGTTATTGTGATTTGCTTCTCCCCAGATCCCCCTCCCCGGATTGAGGTCCCTCAATCACGTGTTCGGAGGAGTATATCGGCAGAAGGATTGAATTTTCTCAAGGGTGTACTAGACAGCAACTCTTGA 1083 47.18 MEDENSNNSDNLKQLTNGKPPRHLSVMRHCISSARLLAATDFELGTGMIVKSPPDGKSGFLPVFRSGSCAERGPKQYMEDEHICIDNLIEHLGATADFPCPGAFYGVFDGHGGTDAASFVRKNILKFMVEDSHFPLCVQKAIKSAFVKADHAFADASSLDISSGTTALTAFIFGRTMLIANAGDCRAVLGKRGRALELSRDHKPNCPSERLRIEKLGGVVYDGYLNGQLSVARALGDWHMKVPKGSACPLSAEPELQETLLTEDDEFLIMGCDGLWDVMSSQCAVTMARKELMLHNDPERCSKELVREALKRDTCDNLTVIVICFSPDPPPRIEVPQSRVRRSISAEGLNFLKGVLDSNS* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 708206 712862 + Vvi18g72 Vvi18g72 779775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g72 360 Gene3D - 55 328 IPR036457 -
Vvi18g72 360 SMART PP2C_4 55 323 IPR001932 -
Vvi18g72 360 SUPERFAMILY PP2C-like 59 326 IPR036457 -
Vvi18g72 360 Pfam Protein phosphatase 2C 66 317 IPR001932 -
Vvi18g72 360 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 2 347 - -
Vvi18g72 360 ProSiteProfiles PPM-type phosphatase domain profile. 65 325 IPR001932 -
Vvi18g72 360 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g72 360 CDD PP2Cc 64 325 IPR001932 -
Vvi18g72 360 PANTHER PROTEIN PHOSPHATASE 2C 2 347 IPR015655 GO:0004722|GO:0006470
Vvi18g72 360 ProSitePatterns PPM-type phosphatase domain signature. 104 112 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1210 Vvi18g72 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g72 K14803 - vvi:100265005 719.539