Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g726 ATGGCTGTGTACGAGGCCTGGCTTGCAAAGCACGGCAAATCGTACAACGCTTTGGGGGAGAAGGAAAGAAGGTTTCAGATCTTTAAGGACAACCTCAGGTTCATCGATGAACACAACGCCGAGAACCGGACCTATAAGATTAGCGATCGTTACGCTTTTCGTGTCGGCGATTCCTTGCCGGAGTCCGTTGATTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTGTGATACATCATATAATGAAGGATGCAATGGGGGACTTATGGACTATGCCTTTGAGTTCATTATCAACAACGGAGGCATTGACTCTGAAGAAGATTACCCCTACAAAGCTTCCGATGGCAGATGTGACCAGTATAGGAAAAATGCCAAGGTTGTTACAATCGATGGGTATGAAGATGTTCCTGAGAATGATGAGAAGTCACTTGAAAAGGCAGTGGCAAATCAACCAGTGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACTCATGGGGTGCCAGCTGGGGAGAGGAAGGATATATCAGGATGGAGCGTGATCTTGCTACTAGTGCGACAGGGAAGTGTGGAATTGCTATGGAAGCCTCTTACCCTATCAAAAAAGGCCAAAACCCGCCCAACCCTGGCCCGTCTCCTCCCTCTCCAATAAAGCCCCCAACTGTCTGTGATAACTACTACGCATGTCCTGAGAGCAGCACCTGCTGCTGCATCTTTGAGTATGCTAAGTATTGCTTTCAATGGGGATGCTGCCCACTTGAGGCTGCCACCTGCTGTGAAGATCATGATAGCTGCTGCCCCCAGGAATATCCCGTCTGCAATGTCCGTGCAGGGACCTGCATGATGAGCAAGGACAACCCATTGGGAGTCAAGGCATTGAAGCGCACTGCTGCTAAACCTCATTGGGCCTATGGGGGTGATGGCAAGAGAAGCAGTGCTTAA 1167 48.93 MAVYEAWLAKHGKSYNALGEKERRFQIFKDNLRFIDEHNAENRTYKISDRYAFRVGDSLPESVDWRKKGAVVEVKDQGSCGSCWAFSTIAAVEGINKIVTGGLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDSEEDYPYKASDGRCDQYRKNAKVVTIDGYEDVPENDEKSLEKAVANQPVSVAIEAGGREFQLYQSGIFTGRCGTALDHGVTAVGYGTENGVDYWIVKNSWGASWGEEGYIRMERDLATSATGKCGIAMEASYPIKKGQNPPNPGPSPPSPIKPPTVCDNYYACPESSTCCCIFEYAKYCFQWGCCPLEAATCCEDHDSCCPQEYPVCNVRAGTCMMSKDNPLGVKALKRTAAKPHWAYGGDGKRSSA* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8368863 8373082 - Vvi18g726 Vvi18g726 780429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g726 388 PANTHER CYSTEINE PROTEASE 45 305 - -
Vvi18g726 388 PANTHER CYSTEINE PROTEASE 1 47 - -
Vvi18g726 388 SMART pept_c1 59 275 IPR000668 GO:0006508|GO:0008234
Vvi18g726 388 CDD Peptidase_C1A 60 274 IPR039417 -
Vvi18g726 388 SUPERFAMILY Granulin repeat 295 329 - -
Vvi18g726 388 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 77 88 IPR000169 -
Vvi18g726 388 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 45 305 - -
Vvi18g726 388 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 47 - -
Vvi18g726 388 Gene3D Granulin 295 358 IPR037277 -
Vvi18g726 388 SMART Inhibitor_I29_2 4 53 IPR013201 -
Vvi18g726 388 SUPERFAMILY Cysteine proteinases 2 275 IPR038765 -
Vvi18g726 388 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 217 227 IPR025660 -
Vvi18g726 388 Gene3D Cysteine proteinases 1 277 - -
Vvi18g726 388 Pfam Granulin 309 356 IPR000118 -
Vvi18g726 388 Pfam Cathepsin propeptide inhibitor domain (I29) 4 47 IPR013201 -
Vvi18g726 388 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 234 253 IPR025661 -
Vvi18g726 388 SMART GRAN_2 298 355 IPR000118 -
Vvi18g726 388 PRINTS Papain cysteine protease (C1) family signature 77 92 IPR000668 GO:0006508|GO:0008234
Vvi18g726 388 PRINTS Papain cysteine protease (C1) family signature 219 229 IPR000668 GO:0006508|GO:0008234
Vvi18g726 388 PRINTS Papain cysteine protease (C1) family signature 234 240 IPR000668 GO:0006508|GO:0008234
Vvi18g726 388 Pfam Papain family cysteine protease 59 275 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g726 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - vvi:100241957 776.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g605 Vvi18g726 ECH
Vvi7g1018 Vvi18g726 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71