Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g727 ATGGCAGTGGAGCTGATGATGGGGTACGCCAACGATAGTTTTGCAGCAAAAATGGAAGATAATGCTCTCCAGGAAGCTGCGTCTGCTGGGATCCAGAGCGTTGAGAAGCTTGTAAAGTTGCTATCTCAATGCCAGCAACAGAAGCAGACCACAACCTCTCTGGAAATTGATATTGATTGCACGGCTGTTGCGGACATGGCCGTCACCAAGTTCAAGAGGGTTATTTCGTTGCTGGATCGAACAAGAACTGGTCACGCTCGCTTCAGAAGGGCTCCTTTGGTGCCTCCTCAACAGCCGCCCCAAGATACCGACACCCCAGTTCCTGTTAGCCATCACCAGCCGGCTGAGGATAAACAAACCTCTGTTTCTAAGATTTATTGTCCAACTCCTGTTCATCCCATAGAGAAGAAGGAATCTATGACTACAATCAATTTCACAACTTCTCATTCAGTCTCTGCTCCCAACTCTTTCGTATCATCGTTAACGGGAGACACCGAAAGCGTCCAACCGTCTTTATCGTCTGGGTTTCATATTTCGAATCTATCACAGGTTTCATCTGCGGGTCGGCCTCCTCTTTCCTCGTCTTCATTGAAGAGAAAGTGCAGTTCAATGGACGACGCAGGTGCCAAGTGCGGATCATCTTTTGGGCGGTGTCATTGTTCTAAGAAAAGGAAATTGAGAGTGAAGAGAGTGGTCAGAGTTCCTGCAATAAGCACCAAGATGGCTGATATTCCACCGGATGATTTTTCTTGGAGAAAGTATGGTCAGAAACCTATCAAAGGTTCTCCGCATCCAAGGGGATATTACAAGTGCAGTAGCGTGAGAGGGTGCCCCGCACGCAAACACGTGGAACGGGCTCTCGACGATCCGACGGTGCTGACTGTCACCTATGAAGGCGATCACAACCACTCTCAATCAATTACGGACGCTACTGCAGCTCTCGTTCTCGAATCATCCTAA 960 48.54 MAVELMMGYANDSFAAKMEDNALQEAASAGIQSVEKLVKLLSQCQQQKQTTTSLEIDIDCTAVADMAVTKFKRVISLLDRTRTGHARFRRAPLVPPQQPPQDTDTPVPVSHHQPAEDKQTSVSKIYCPTPVHPIEKKESMTTINFTTSHSVSAPNSFVSSLTGDTESVQPSLSSGFHISNLSQVSSAGRPPLSSSSLKRKCSSMDDAGAKCGSSFGRCHCSKKRKLRVKRVVRVPAISTKMADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPTVLTVTYEGDHNHSQSITDATAALVLESS* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8391929 8393726 + Vvi18g727 Vvi18g727 780430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g727 319 PANTHER WRKY TRANSCRIPTION FACTOR 7 ISOFORM X1-RELATED 12 319 - -
Vvi18g727 319 Pfam Plant zinc cluster domain 198 243 IPR018872 -
Vvi18g727 319 MobiDBLite consensus disorder prediction 91 120 - -
Vvi18g727 319 Gene3D WRKY domain 230 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi18g727 319 MobiDBLite consensus disorder prediction 104 120 - -
Vvi18g727 319 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi18g727 319 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi18g727 319 SUPERFAMILY WRKY DNA-binding domain 242 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi18g727 319 Pfam WRKY DNA -binding domain 247 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi18g727 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 319 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1021 Vvi18g727 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14353 PF03106 WRKY 2.80E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g727 - - vvi:100247092 567.77