Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g729 ATGCTCAATACTACACAGTCTCTTGCTCCGTGCTTGTTTATTCTCTCGGTCGCTTTTTTGACTGCTTCTTCCACTGCTGCCACTCATCCACCGCATGCTGTTTCGCCCTCGCCCTCGCCCACGCTACCACCATCTGATGCCATTGCCCTTGTCATGTTCAAATCCAAAGCCGACTTGGGTAACAAGCTTCGCTTCACTGCAAGCACCAGTCTCAATTACTGCTATTGGCAAGGAGTCACATGCCTCCGAGGGAAAGTGGTGCGCCTAGTTCTGGAAGGGCTCGATCTCGGTGGGGTTTTTGGTCCTGACACATTGAGTCGTCTTGACCAACTTAGAGTCCTCAGTTTGCAGAACAACTCGCTCGTTGGACCCATTCCAGATCTCTCCAAATTCTTCAATCTCAAGGCTCTGTTTCTTGATCACAACTCGTTCACGGGCTCTTTTCCACCTTCAATCTCGTCGCTTCATCGGCTTCGAACCCTTGATTTCTCTTACAATAATCTGACCGGCCCTTTACCTATTTGGTTAACAAAACTAGATCGGCTATACTACCTGCGACTTGAGTCGAACCGGTTCAACGGAACGATTCCTCCACTCAACCAGTCCACTCTCCAAACGTTTAATGTTTCGCGTAATAACCTCTTCGGTGCCATACCCGTGACACCTACTTTGTTGCACTTTGAAGCGTCTGCGTTCGCATTGAACCCTGGTCTCTGCGGTGAGATTCTTCACAAGGAGTGCCACCCGAGTCAACCCTTTTTTAGTCCATCAGCGCCGGTCGCCACGCCACCACCGCCAGTGGGTCTTGGGCAAAACGAGCAGGTGCACGGTGTTGAGTTGGCTCAACCGTGTCCGAAGAATCATAAGAGAACCGTGGTGATCCTGGGCTTCTCATCTGGGGTGTTCGTTCTGATTAGTTCACTTCTTTGTTTTGTGATAGCAATGAAGAGACAGCGAAACCAGAGGAACACAGCGCCGACGATGGCTTCTGACTCTGCAGCAACAGCCCAGGCTGCGGCCGTGATGAGAATAGAAGAAGAGAACGAGTTGGAGGAGAAGGTGAAGAAGGTACAGGGAATGCAAGTGGCGAAGAGTGGGAGTTTAGTATTTTGTGCAGGGGAGGCGCAGCTGTATACTCTGGAACAGCTGATGAGGGCTTCAGCTGAGTTGCTGGGGAGAGGAAGCATAGGGACCACTTACAAAGCGGTGTTGGATAACCGTCTGATCGTCAGCGTGAAGAGACTCGACGCCGGTAAAACAGCGATCACAGATAAAGAGACGTACGAGCGTCACATGGAATCAGTTGGTGGACTTCGCCACCCAAATCTGGTTCCGCTCAGAGCCTATTTCCAGGCCCAGGAAGAGAGACTCCTCATCTACGATTACCAGCCCAACGGCAGTCTCTTCTCCCTCATTCACGGTTCAAAGTCAACGAGGGCAAAGCCTCTTCACTGGACATCGTGTTTGAAAATAGCAGAGGACGTGGCCCAAGGTCTGTCCTACATACATCAAGCATGGAGACTTGTCCATGGCAATCTCAAGTCCTCCAACGTCCTCCTCGGCCCTGATTTCGAGGCTTGTCTCACCGACTACTGCCTCGCCGTCCTCGCCTCCCCCTCCGTAGACGACGATCTCGACTCCGCCTCTTATAAAGCTCCCGAAACCCGAAATCCCAGTGGGCAAGCAACGTCTAAAGCCGACGTGTATGCATTCGGCATTCTCCTGCTGGAGCTTCTAACGGGTAAACCTCCATCGCAGCATCCGGTTCTAATGCCAGATGATATGATGAACTGGGTTAGATCCACCAGGGACGACGATGATGGGGAAGATAACAGGATGGGGATGCTTCTTGAAGTAGCCATTGCCTGTAGTGTGACCTCGCCGGAGCAGAGGCCCACAATGTGGCAAGTCTTGAAAATGATACAGGAGATTAAAGAGAGTGTATTAATGGAGGACAACGAGTTGGACCCACTCACTGGGTTATTGAATAATAAATTAATTTATTTTTCTATATTTTGTTCATTTTAG 2028 50.59 MLNTTQSLAPCLFILSVAFLTASSTAATHPPHAVSPSPSPTLPPSDAIALVMFKSKADLGNKLRFTASTSLNYCYWQGVTCLRGKVVRLVLEGLDLGGVFGPDTLSRLDQLRVLSLQNNSLVGPIPDLSKFFNLKALFLDHNSFTGSFPPSISSLHRLRTLDFSYNNLTGPLPIWLTKLDRLYYLRLESNRFNGTIPPLNQSTLQTFNVSRNNLFGAIPVTPTLLHFEASAFALNPGLCGEILHKECHPSQPFFSPSAPVATPPPPVGLGQNEQVHGVELAQPCPKNHKRTVVILGFSSGVFVLISSLLCFVIAMKRQRNQRNTAPTMASDSAATAQAAAVMRIEEENELEEKVKKVQGMQVAKSGSLVFCAGEAQLYTLEQLMRASAELLGRGSIGTTYKAVLDNRLIVSVKRLDAGKTAITDKETYERHMESVGGLRHPNLVPLRAYFQAQEERLLIYDYQPNGSLFSLIHGSKSTRAKPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACLTDYCLAVLASPSVDDDLDSASYKAPETRNPSGQATSKADVYAFGILLLELLTGKPPSQHPVLMPDDMMNWVRSTRDDDDGEDNRMGMLLEVAIACSVTSPEQRPTMWQVLKMIQEIKESVLMEDNELDPLTGLLNNKLIYFSIFCSF* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8418529 8422383 + Vvi18g729 Vvi18g729 780432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g729 675 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 653 - -
Vvi18g729 675 Pfam Protein kinase domain 388 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g729 675 Gene3D Transferase(Phosphotransferase) domain 1 464 657 - -
Vvi18g729 675 SUPERFAMILY L domain-like 52 221 - -
Vvi18g729 675 Gene3D Phosphorylase Kinase; domain 1 349 462 - -
Vvi18g729 675 SUPERFAMILY Protein kinase-like (PK-like) 389 650 IPR011009 -
Vvi18g729 675 Gene3D Ribonuclease Inhibitor 45 200 IPR032675 -
Vvi18g729 675 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Vvi18g729 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 653 - -
Vvi18g729 675 Gene3D Ribonuclease Inhibitor 201 251 IPR032675 -
Vvi18g729 675 ProSiteProfiles Protein kinase domain profile. 385 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1024 Vvi18g729 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76392 PF00069 Pkinase 2.60E-32 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g729 - - vvi:100250658 1268.06